RNA id: TU181264


Basic Information

Item Value
RNA id TU181264
length 1263
lncRNA type inter_gene
GC content 0.33
exon number 1
gene id G144136
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 9140642 ~ 9141904 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tttttatttcagcaaaAGGTTGCTATATCTACAGCAATAAGCTGAATGATTATACGGTGAACACCGCCATCTCAGTACATCcaaaaattaaaagcagacaAATGTATAACTTGTTCTTGTTACATTCACTACTCAGAAACACGCAAGGTTTTTCAGgatgaataaaactaaaaccttTTATCTTTATTTAGCATACAGAACATGAGGAAGTTTCAGCACCATTACCATgtggtttacatttaaaataaaaaaaaagcttatctGTAGATAATTCTCTGCACATATTTACCTGCATATCTCCTGAAACAGTAAATCAGTTTACATAAGGTAGTTGTACGTGAGGGTTCTTGATATTAGGAAGCAAATATTATAAGAATTACAGTATTAAACAACATTACAGAAGAGGTTCAgtcacaccaaaaaaaaaaaaaagaaatgtttgtatttaacttggttaaattacataataaacaccaattttatgtatatatatttatatatatatatatatttcaggaaTTTGTGTTGTGAGGTCCCGCTGTCTGAATGCAGCTACCTCTAACATTTGAAATCCAAATGTTCACTGAGATTTTTTGTTCAAGACGTGCGTTTATCGAACTGAAGGAAAACCTCTGATCAGAGATCCAAACCGAAACTGACCATATTCACACACTTGAGAAACACTGATACAGCTGCGGTGGTTTCAACAGCTGAACAATATAAGTTGTCTTcagtcaaaataaacaattaatcttgtattattgtgcgtttaatgattttaaagaacTTGTGAAAATATCTGAAAGCATTTACAATAAGCTATAAAGTTAATGTGAAATTGTATTCTTCTGGTATGAAAACATTAGTAATGCTATTCTTTCTAGTGTAGCGCTGTTGACTATACATGTAGAATTTGTCTGCTAGTGTTCCTACAAACAGCATTTGATTCTTACAGACTCACCACCCTGTCACTATCTGAGGTATGGGTTGTTTCTTTTGGTAGTGGGTTCACActgtcaattaaaatgaaaatttggagagagaaaaaaagagagacaaatGCTGCCAACCTAACgtctgacttttaaaaatagaaacactgTAAAAGCTTGCTAAAATTCAGTGAAAAGTTTCAAAAACATCTAGCAATACTTACAAGTGATGTTGAGTAAGAAATGATTTCAGACCCATCACTGTCCAGTTCCCcaggtttcttttgtttgccgttttttttttgcctcagaaatgtaatgtttgaattcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU181233 lncRNA upstream 288196 8852245 ~ 8852446 (+) True G144111
TU181198 lncRNA upstream 314862 8793677 ~ 8825780 (+) True G144082
TU181094 lncRNA upstream 1039303 8101026 ~ 8101339 (+) True G143997
TU181055 lncRNA upstream 1091332 7978646 ~ 8049310 (+) True G143962
TU181065 lncRNA upstream 1128624 8009531 ~ 8012018 (+) True G143970
TU181265 lncRNA downstream 3550 9145454 ~ 9145853 (+) True G144137
TU181268 lncRNA downstream 28091 9169995 ~ 9170249 (+) True G144139
TU181270 lncRNA downstream 31001 9172905 ~ 9173149 (+) True G144141
TU181336 lncRNA downstream 301752 9443656 ~ 9443894 (+) True G144195
TU181351 lncRNA downstream 305685 9447589 ~ 9448533 (+) True G144210
AMCG00004904 mRNA upstream 223241 8907831 ~ 8917401 (+) True AMCG00004904
AMCG00004905 mRNA upstream 234046 8889969 ~ 8906596 (+) True AMCG00004905
AMCG00004903 mRNA upstream 260906 8854259 ~ 8879736 (+) True AMCG00004903
AMCG00004906 mRNA upstream 317708 8792926 ~ 8822934 (+) True AMCG00004906
AMCG00004892 mRNA upstream 611908 8514010 ~ 8528734 (+) True AMCG00004892
AMCG00004910 mRNA downstream 7608 9149512 ~ 9198176 (+) True AMCG00004910
AMCG00004909 mRNA downstream 59221 9201125 ~ 9211479 (+) True AMCG00004909
AMCG00004907 mRNA downstream 183636 9325540 ~ 9343692 (+) True AMCG00004907
AMCG00004908 mRNA downstream 204944 9346848 ~ 9355689 (+) True AMCG00004908
AMCG00004914 mRNA downstream 217996 9359900 ~ 9397437 (+) True AMCG00004914
TU180912 other upstream 1409642 7729389 ~ 7731000 (+) False AMCG00004870
TU180621 other upstream 3716521 5423703 ~ 5424121 (+) True G143626
TU180426 other upstream 4768553 4371709 ~ 4372089 (+) True G143471
TU180351 other upstream 5030987 4109022 ~ 4109655 (+) True G143404
TU180311 other upstream 5190805 3949426 ~ 3949837 (+) True G143366
TU181952 other downstream 2520777 11662681 ~ 11663368 (+) True G144677
TU182286 other downstream 3638676 12780580 ~ 12781170 (+) True G144940
TU183002 other downstream 6242339 15384243 ~ 15384612 (+) False AMCG00005105
TU183561 other downstream 8623353 17765257 ~ 17771525 (+) True G145932
TU184056 other downstream 10437669 19579573 ~ 19579807 (+) True G146305

Expression Profile