RNA id: TU181270



Basic Information


Item Value
RNA id TU181270
length 245
lncRNA type intronic
GC content 0.42
exon number 1
gene id G144141
representative True

Chromosome Information


Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 9172905 ~ 9173149 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


CTGGCTCCTTTGCTCGTTATCTCATGCTGCTGTTGTATTGCTGCCGTGTCCATTAAAGCTCCATACCAAAGCAAGGACCCAACCAACAGGACGCCGCATGCGTAAAACCAAGAAATGcgcttgaaaaataaatagaaaaacctATATTGTTGTATCAGAATAATGAACCTACCTTTCCACTGCAGGAAATGTAAACAGTAAACGCTTTAATCGTTACACTTGATTATTGTTCGCTTTCGTCCTCC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU181268 lncRNA upstream 2656 9169995 ~ 9170249 (+) True G144139
TU181265 lncRNA upstream 27052 9145454 ~ 9145853 (+) True G144137
TU181264 lncRNA upstream 31001 9140642 ~ 9141904 (+) True G144136
TU181233 lncRNA upstream 320459 8852245 ~ 8852446 (+) True G144111
TU181198 lncRNA upstream 347125 8793677 ~ 8825780 (+) True G144082
TU181336 lncRNA downstream 270507 9443656 ~ 9443894 (+) True G144195
TU181351 lncRNA downstream 274440 9447589 ~ 9448533 (+) True G144210
TU181359 lncRNA downstream 290992 9464141 ~ 9466613 (+) True G144218
TU181368 lncRNA downstream 321347 9494496 ~ 9500978 (+) True G144227
TU181382 lncRNA downstream 380951 9554100 ~ 9557475 (+) True G144237
AMCG00004904 mRNA upstream 255504 8907831 ~ 8917401 (+) True AMCG00004904
AMCG00004905 mRNA upstream 266309 8889969 ~ 8906596 (+) True AMCG00004905
AMCG00004903 mRNA upstream 293169 8854259 ~ 8879736 (+) True AMCG00004903
AMCG00004906 mRNA upstream 349971 8792926 ~ 8822934 (+) True AMCG00004906
AMCG00004892 mRNA upstream 644171 8514010 ~ 8528734 (+) True AMCG00004892
AMCG00004909 mRNA downstream 27976 9201125 ~ 9211479 (+) True AMCG00004909
AMCG00004907 mRNA downstream 152391 9325540 ~ 9343692 (+) True AMCG00004907
AMCG00004908 mRNA downstream 173699 9346848 ~ 9355689 (+) True AMCG00004908
AMCG00004914 mRNA downstream 186751 9359900 ~ 9397437 (+) True AMCG00004914
AMCG00004915 mRNA downstream 226647 9399796 ~ 9402207 (+) True AMCG00004915
TU180912 other upstream 1441905 7729389 ~ 7731000 (+) False AMCG00004870
TU180621 other upstream 3748784 5423703 ~ 5424121 (+) True G143626
TU180426 other upstream 4800816 4371709 ~ 4372089 (+) True G143471
TU180351 other upstream 5063250 4109022 ~ 4109655 (+) True G143404
TU180311 other upstream 5223068 3949426 ~ 3949837 (+) True G143366
TU181952 other downstream 2489532 11662681 ~ 11663368 (+) True G144677
TU182286 other downstream 3607431 12780580 ~ 12781170 (+) True G144940
TU183002 other downstream 6211094 15384243 ~ 15384612 (+) False AMCG00005105
TU183561 other downstream 8592108 17765257 ~ 17771525 (+) True G145932
TU184056 other downstream 10406424 19579573 ~ 19579807 (+) True G146305

Expression Profile