RNA id: TU181271


Basic Information

Item Value
RNA id TU181271
length 1354
lncRNA type intronic
GC content 0.32
exon number 1
gene id G144142
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 9140619 ~ 9141972 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tttataatgcattcaGAATTTACCTTCCCTTTTTTATATCAGCATCTTATTGTCctttaagaaaataaggaattcaaacattacatttctgaggcaaaaaaaaaacggcaaacaaaagaaacctgGGGAACTGGACAGTGATGGGTCTGAAATCATTTCTTACTCAACATCACTTGTAAGTATTGCTAGATGTTTTTGAAACTTTTCACTGAATTTTAGCAAGCTTTTAcagtgtttctatttttaaaagtcagacGTTAGGTTGGCAGCatttgtctctctttttttctctctccaaattttcattttaattgacagTGTGAACCCACTACCAAAAGAAACAACCCATACCTCAGATAGTGACAGGGTGGTGAGTCTGTAAGAATCAAATGCTGTTTGTAGGAACACTAGCAGACAAATTCTACATGTATAGTCAACAGCGCTACACTAGAAAGAATAGCATTACTAATGTTTTCATACCAGAAGAATACAATTTCACATTAACTTTATAGCTTATTGTAAATGCTTTCAGATATTTTCACAAgttctttaaaatcattaaacgcacaataatacaagattaattgtttattttgactgAAGACAACTTATATTGTTCAGCTGTTGAAACCACCGCAGCTGTATCAGTGTTTCTCAAGTGTGTGAATATGGTCAGTTTCGGTTTGGATCTCTGATCAGAGGTTTTCCTTCAGTTCGATAAACGCACGTCTTGAACAAAAAATCTCAGTGAACATTTGGATTTCAAATGTTAGAGGTAGCTGCATTCAGACAGCGGGACCTCACAACACAAAttcctgaaatatatatatatatataaatatatatacataaaattggtgtttattatgtaatttaaccaagttaaatacaaacatttcttttttttttttttggtgtgacTGAACCTCTTCTGTAATGTTGTTTAATACTGTAATTCTTATAATATTTGCTTCCTAATATCAAGAACCCTCACGTACAACTACCTTATGTAAACTGATTTACTGTTTCAGGAGATATGCAGGTAAATATGTGCAGAGAATTATCTACagataagctttttttttattttaaatgtaaaccacATGGTAATGGTGCTGAAACTTCCTCATGTTCTGTATGCTAAATAAAGATAAaaggttttagttttattcatcCTGAAAAACCTTGCGTGTTTCTGAGTAGTGAATGTAACAAGAACAAGTTATACATTtgtctgcttttaatttttgGATGTACTGAGATGGCGGTGTTCACCGTATAATCATTCAGCTTATTGCTGTAGATATAGCAACCTtttgctgaaataaaaaaggtaaaagcttttcttttgctt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU181252 lncRNA downstream 219466 8916491 ~ 8921153 (-) True G144124
TU181182 lncRNA downstream 611712 8527531 ~ 8528907 (-) True G144072
TU181007 lncRNA downstream 1281907 7857350 ~ 7858712 (-) True G143922
TU180909 lncRNA downstream 1414454 7722188 ~ 7726165 (-) True G143860
TU180908 lncRNA downstream 1419733 7720174 ~ 7720886 (-) True G143859
TU181346 lncRNA upstream 275560 9417532 ~ 9418417 (-) True G144205
TU181347 lncRNA upstream 278530 9420502 ~ 9420880 (-) True G144206
TU181349 lncRNA upstream 297754 9439726 ~ 9440310 (-) True G144208
TU181350 lncRNA upstream 299328 9441300 ~ 9442501 (-) True G144209
TU181395 lncRNA upstream 405231 9547203 ~ 9548406 (-) False G144241
AMCG00004901 mRNA downstream 64533 9072340 ~ 9076086 (-) True AMCG00004901
AMCG00004894 mRNA downstream 292844 8836770 ~ 8847775 (-) True AMCG00004894
AMCG00004893 mRNA downstream 305219 8824870 ~ 8835400 (-) True AMCG00004893
AMCG00004900 mRNA downstream 766863 8367091 ~ 8373756 (-) True AMCG00004900
AMCG00004899 mRNA downstream 779771 8353966 ~ 8360848 (-) True AMCG00004899
AMCG00004911 mRNA upstream 83679 9225651 ~ 9268221 (-) True AMCG00004911
AMCG00004912 mRNA upstream 139222 9281194 ~ 9287486 (-) True AMCG00004912
AMCG00004916 mRNA upstream 260819 9402791 ~ 9410450 (-) True AMCG00004916
AMCG00004917 mRNA upstream 290405 9432377 ~ 9457795 (-) True AMCG00004917
AMCG00004920 mRNA upstream 334865 9476837 ~ 9515322 (-) True AMCG00004920
TU181238 other downstream 234025 8872885 ~ 8906594 (-) True G144115
TU181227 other downstream 299631 8836360 ~ 8840988 (-) False AMCG00004894
TU181155 other downstream 763618 8353989 ~ 8377001 (-) True G144050
TU180667 other downstream 3357435 5736809 ~ 5783184 (-) True G143659
TU180357 other downstream 5024205 4113747 ~ 4116414 (-) False AMCG00004819
TU182156 other upstream 3012153 12154125 ~ 12156378 (-) False AMCG00005011
TU182157 other upstream 3012153 12154125 ~ 12156378 (-) True AMCG00005011
TU182413 other upstream 4194237 13336209 ~ 13336746 (-) True G145046
TU182803 other upstream 5822607 14964579 ~ 14967623 (-) False AMCG00005077
TU183873 other upstream 9872575 19014547 ~ 19015663 (-) False AMCG00005214

Expression Profile