RNA id: TU181346


Basic Information

Item Value
RNA id TU181346
length 886
lncRNA type inter_gene
GC content 0.60
exon number 1
gene id G144205
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 9417532 ~ 9418417 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTCATACTCACCACACTGCTCTCAGTTTGCAGGCCTGGGTTTTGCTCAGCTTCTTCCAGCAAGACATACTGCCCTCTGAAAAACTCCAGGACCCTTGAGGTCAGCAGCTCAGTCTCTTTTTTCAGCACTTGGTAGTCAGGCAGCGGGGCAGACGGCCGAGCCCCTCGTGAGGCAGGACCAGAGCCGCCCACCGCCAACTCCCCCTCCCACTCCTCCAGGTCGTCCTCGTCCAGCTCTTCCTCCGGCTGGGCCAAAGCCTCCGCGGAATCTGTTGGTTTATAGTCCGGCCCGTACAGGAAACGCAGTGTCTCTTGGGTCTTCCATTCGCTCAGCGTTCGACTTAAGGTCTCCAGCAGGCTCCTTCTCACCACAGACGGAGGCGCCTCCCGGTCCAGCCTGTGTTTCGCGAGGAGACCCTTCAGGCCCTCTGCTCCTTTCTTGCTGACGCCGATGCACGTGATGTTCAGGTCCTCAGGCGTGTCATTTTTAGTTTCACGCTCTGGGTCTGTGCGTCTGTCCGCTACAGGCAGCCCCACACTGTTGTCCTGCTCTGGTAGACCAGCGGTGGTGACCTGACCTTCAGTGCTGGCTATTACACACTTGCTCAATCGCTCCGTggcctcctccaccacccccaCACCTCCGCCGGGTTTCTCCTGTGCACTCCTGTGTCGCTCAGTCTTATCCGTGGGGGGGTGCTTTCCGTGCCTGGGCCCCACCCTCCCTGCGGACACCATGCTGGAGATGAACTCTTGCTCGGGCTCGCTGCTGTCACTCTCGGTGGCCAACAACGGCAAGTCAGGGCGCTTCTCCTCCAGCAGGGGGGGATTCTCGATCTCTGACACTGATAGTGGCTTGTCAGCTATCTGCACCTCCTCTCCCAAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU181271 lncRNA downstream 275560 9140619 ~ 9141972 (-) True G144142
TU181252 lncRNA downstream 496379 8916491 ~ 8921153 (-) True G144124
TU181182 lncRNA downstream 888625 8527531 ~ 8528907 (-) True G144072
TU181007 lncRNA downstream 1558820 7857350 ~ 7858712 (-) True G143922
TU180909 lncRNA downstream 1691367 7722188 ~ 7726165 (-) True G143860
TU181347 lncRNA upstream 2085 9420502 ~ 9420880 (-) True G144206
TU181349 lncRNA upstream 21309 9439726 ~ 9440310 (-) True G144208
TU181350 lncRNA upstream 22883 9441300 ~ 9442501 (-) True G144209
TU181395 lncRNA upstream 128786 9547203 ~ 9548406 (-) False G144241
TU181391 lncRNA upstream 130373 9548790 ~ 9551306 (-) True G144241
AMCG00004916 mRNA downstream 7082 9402791 ~ 9410450 (-) True AMCG00004916
AMCG00004912 mRNA downstream 130046 9281194 ~ 9287486 (-) True AMCG00004912
AMCG00004911 mRNA downstream 149311 9225651 ~ 9268221 (-) True AMCG00004911
AMCG00004902 mRNA downstream 265085 9139161 ~ 9152447 (-) True AMCG00004902
AMCG00004901 mRNA downstream 341446 9072340 ~ 9076086 (-) True AMCG00004901
AMCG00004917 mRNA upstream 13960 9432377 ~ 9457795 (-) True AMCG00004917
AMCG00004920 mRNA upstream 58420 9476837 ~ 9515322 (-) True AMCG00004920
AMCG00004919 mRNA upstream 134648 9553065 ~ 9558253 (-) True AMCG00004919
AMCG00004922 mRNA upstream 338810 9757227 ~ 9760024 (-) True AMCG00004922
AMCG00004931 mRNA upstream 424501 9842918 ~ 9847710 (-) True AMCG00004931
TU181238 other downstream 510938 8872885 ~ 8906594 (-) True G144115
TU181227 other downstream 576544 8836360 ~ 8840988 (-) False AMCG00004894
TU181155 other downstream 1040531 8353989 ~ 8377001 (-) True G144050
TU180667 other downstream 3634348 5736809 ~ 5783184 (-) True G143659
TU180357 other downstream 5301118 4113747 ~ 4116414 (-) False AMCG00004819
TU182156 other upstream 2735708 12154125 ~ 12156378 (-) False AMCG00005011
TU182157 other upstream 2735708 12154125 ~ 12156378 (-) True AMCG00005011
TU182413 other upstream 3917792 13336209 ~ 13336746 (-) True G145046
TU182803 other upstream 5546162 14964579 ~ 14967623 (-) False AMCG00005077
TU183873 other upstream 9596130 19014547 ~ 19015663 (-) False AMCG00005214

Expression Profile