RNA id: TU181349


Basic Information

Item Value
RNA id TU181349
length 585
lncRNA type intronic
GC content 0.43
exon number 1
gene id G144208
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 9439726 ~ 9440310 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TACAGCTGTGTAAGAATCATTTGTGCCGTGTAGAAACTGGGCGTGTCACACACCTGGTCAGGGCCCGGTCAGTCGGCCTGGTGTTGGAAGACCTGCACTAGGCTCTGGAGATCATGATCCGTCAGCCGTAGCTCCTTCATGAGGGCCGAGATGTAGGCGATGGACGTGGGGCTCTCCAGAGAGGCCTGCAGCACTGGAGATATGCCGGTCAAGCTGAAATAATGACAAGGATCGTTATACGTCCGAAAAGTATTGAATATCACATGTTGTCCTATGGGACAGATTTAgacaattaatatattaaccAATAAACTAAAGCggtttacaaaaacacacaaaacaaagcataaaatgaataaagccAATGACTTGAGCCAATGTGAACAATGGTAATTTCAGTCCTTTCCAAAAAAGGCCACAttctaatataaaatgtatgtatttcaggTATTCCTCTCATTCTACACATCTGCACATTAtgagacacacatacactgtcCAGCTGTTCTTAACTCCTGCCCTTCAGATGTAAATACCAACATGTTCACAAGATGTCTCtaaaacatgtacagtgagggaaaaaag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU181347 lncRNA downstream 18846 9420502 ~ 9420880 (-) True G144206
TU181346 lncRNA downstream 21309 9417532 ~ 9418417 (-) True G144205
TU181271 lncRNA downstream 297754 9140619 ~ 9141972 (-) True G144142
TU181252 lncRNA downstream 518573 8916491 ~ 8921153 (-) True G144124
TU181182 lncRNA downstream 910819 8527531 ~ 8528907 (-) True G144072
TU181350 lncRNA upstream 990 9441300 ~ 9442501 (-) True G144209
TU181395 lncRNA upstream 106893 9547203 ~ 9548406 (-) False G144241
TU181391 lncRNA upstream 108480 9548790 ~ 9551306 (-) True G144241
TU181451 lncRNA upstream 242742 9683052 ~ 9684119 (-) True G144286
TU181464 lncRNA upstream 259004 9699314 ~ 9700409 (-) True G144292
AMCG00004916 mRNA downstream 29276 9402791 ~ 9410450 (-) True AMCG00004916
AMCG00004912 mRNA downstream 152240 9281194 ~ 9287486 (-) True AMCG00004912
AMCG00004911 mRNA downstream 171505 9225651 ~ 9268221 (-) True AMCG00004911
AMCG00004902 mRNA downstream 287279 9139161 ~ 9152447 (-) True AMCG00004902
AMCG00004901 mRNA downstream 363640 9072340 ~ 9076086 (-) True AMCG00004901
AMCG00004920 mRNA upstream 36527 9476837 ~ 9515322 (-) True AMCG00004920
AMCG00004919 mRNA upstream 112755 9553065 ~ 9558253 (-) True AMCG00004919
AMCG00004922 mRNA upstream 316917 9757227 ~ 9760024 (-) True AMCG00004922
AMCG00004931 mRNA upstream 402608 9842918 ~ 9847710 (-) True AMCG00004931
AMCG00004933 mRNA upstream 604906 10045216 ~ 10049989 (-) True AMCG00004933
TU181238 other downstream 533132 8872885 ~ 8906594 (-) True G144115
TU181227 other downstream 598738 8836360 ~ 8840988 (-) False AMCG00004894
TU181155 other downstream 1062725 8353989 ~ 8377001 (-) True G144050
TU180667 other downstream 3656542 5736809 ~ 5783184 (-) True G143659
TU180357 other downstream 5323312 4113747 ~ 4116414 (-) False AMCG00004819
TU182156 other upstream 2713815 12154125 ~ 12156378 (-) False AMCG00005011
TU182157 other upstream 2713815 12154125 ~ 12156378 (-) True AMCG00005011
TU182413 other upstream 3895899 13336209 ~ 13336746 (-) True G145046
TU182803 other upstream 5524269 14964579 ~ 14967623 (-) False AMCG00005077
TU183873 other upstream 9574237 19014547 ~ 19015663 (-) False AMCG00005214

Expression Profile