RNA id: TU181495


Basic Information

Item Value
RNA id TU181495
length 2791
lncRNA type inter_gene
GC content 0.44
exon number 5
gene id G144315
representative False

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 9843429 ~ 9847756 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tgttttaatgttgtttcaaTAAAAATCACCATGTTCAGTAACATTGTAAATTTCCAAGACAAGAAGGTGCCATAAACTATATTATACAGTGCTAGACAACCAAAAGCAAAAAGGTCTCAAGTCCTTATTGAGTCTGCATTCTACACAAGAGGGCCCAAATGTATAAGAAACAAACTTTAGCTTGAACCcttatgagaaaaaaaaaaagtgtaccgTACAACATGAACCTGAATGCAAGAGACATCTACATGTTCATAAGactttgtaaaaatgtacacttcCCATTTAGCGTTCTAAAcctcacattaaaacattacatgcTTGATTAGCAGTCAATATACAAAAAAACCTAGGTTAAgtgaagtttttaaattagGATAACCAACAATTCCAAAAGGCCCACCCAAAATGGAAGTCACCCTAATTTTAATTCATGACCAGCAGAAACTCACTGGATTTAGTCCATTCTAGTAGGCAAGTCTGACAGTGGTAAAGTCCTAAAAGAGGAATGTTAGGAATCTGACCATCCCCCTCCCATTAAGACACGGGAGCAAGAGAATGCGTTTGCATTGCCTTGTGGGAAAACCTTAATGTTAAATTTTTTAGATTTGAAAATTACTTCCTTGTGTTAAGTTGACCAGTCAACTTAGTTATTTAAATGCCAGGTTTCAGCTTCCTTGGGAACAAACTATTACAGTACTAGTTTTAGACCCTTTGGCCTCTCAAAAAAAACCCTAAATTCAAGGGGGAGTAATTCAGTCCTTTTCAGCATCTAGTTCTTGTACTCCTGAGGCTCTTCCCCCTCTTCATTGAGTAAGCATGTGCGAATCAATGCCTCAGTCACGCTGTAGGGGTCACAGTTGGCAGAAGGACGACGGTCTTCAAAGTAGCCCTTCTTATCCTGGCCCACCATGCGAGGGATGCGAATGCTGGCTCCACGGTTGGCCACTCCTGCAGAGAACTCGTGGATGTTGGAGGTTTCATGGTGACCGGTAAGGCGCCTGGCATTGTCCAAGCCTCCCTTAGGGTCATAGGCACGGATATGGTAGTGATGCCTTTTGCCGAGTCTCTCGATTGCCTCCTCGATGTACCTTTAAGCCACCATCATCCCTCATCTCCTTGGTGCTGAAGTTAGTATGGCAGCCGGCACCGTTCCAGTTCCCAGGGATTGGCTTGGGGTCAAAAGAGGCCACGACTCCAAAGTCCTCACAGACTCTGTGCAGAATGAACCTTGCTGCCCACAAATGGTCCCCCATATTGATTCCCTCACATGGGCCAACCTGAAACTCCCACTGGAGGGTGAAATTAAAATTGGATTAATTGACTTTTCCGATAGTCGATTGCTAGATAACCGATAAGGTACGGTAAGATATGAAATCAAGCTTGATAAGACTATTTGACCAGGATGCCACTTAAACACTGTTTCAGTAAACAAATGTCTGAAAGTCAATTAAGGGTGATCTTTATAAAACTGAATCTCTCGTTACACATTAAgagctttaaaataaagtacCAAGCCTCTGGACTTAGTGTTGTGGCATTCAATGCAAACGGCACTGGCAAGTGGATTCTAGCAGCCCACTTAAATAAAGTTGCCATATGACATCACTTATTTTAGCGGTAAGAGAAAGTTGTGCTTACCTGAGCTGGCATGACTTCGGCATTTGTTCCACAGATCTGAACTCCAGCATACAGGCAAGCTCTGTAATGGGCTTCTACAATATCTCTTCCATAGGCCTTGTCTGCACCCACCCCACAATAATAGGGACCTACACAAGACAAATTAACATGCATGAAACCTCACATCACATAGTAGCCACACAAGGGCTGTGGATCGCTGTTCTTGCAGCTATAGAACAGTTATTTCTCAGAATAGATTTCAAAGACTATTTGATttccccttgctccctttcctgtagccttTGACTGTGACCCAACATCTTgactgcacttagcttttacttccTCATTATTgcatttacttgtgtaaattagaATGTGTACAATGTACtctgtaaatttgaatttgtaatgtttggtgccttgtactgaactgtattattgcactttgtattgcactgattttgtaagttgctctggataagggcgtctgccaagaaataaaaataacaaccattTCTTACCTTGAGGTCCAGGGAAGCCATTTGAGGGCCAGCCAAAAGGATGGCCATCTGTGCCCAGTATGGTATACTCCTGCTCCATGCCAAACCAGGGGATTTGGTTTTCTACCATTCTCATGATTTTCTTACAAGAGTTACGCAGCACTTCGCACAAGACCAGTTTGTTGGGGTCTCTGCGGAAGGGGTCTCTGAACATGGCTTGTGGGATGAGGTACATATCACTGTTGGAGCCCTCTGACTGGTAGGTACTGGAGCCATCGAAGTTCCACTCGGGCAGCtctATGCTCTTGGGCTCTGAGTCCAGGGTCCTGGTTTTGCAGCGAAGCCCCTCTCCAGTTCCGTCAATCCAGATGTACATGGCTTGCACTTTGTCTCCCTGGGGGAGCTCCATGTACTGCTGCTTCACAGCCTTGCTCAAGCTGGAGCTGGAAGAGGTGGCCATCTTAATTACTAGAAAAGACCTGTAAGAAATGAAAGTGATGGTAGAAGAGTGGCGACTGGCGCTGCCTCCAGTGAGCGGGTGTAAATGGTCTGGTGTGTAGATGTCTCATTCTCTGGCCCAGAATGGCGGTTTACACTCCCATTTATAACGTGGGAAGCGGGATCCCGGCGCCTGCGATTGGTCGGGGGAAACCTGATCGCCGCCTGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU181455 lncRNA upstream 92652 9700167 ~ 9750777 (+) True AMCG00004921
TU181382 lncRNA upstream 285954 9554100 ~ 9557475 (+) True G144237
TU181368 lncRNA upstream 342451 9494496 ~ 9500978 (+) True G144227
TU181359 lncRNA upstream 376816 9464141 ~ 9466613 (+) True G144218
TU181351 lncRNA upstream 394896 9447589 ~ 9448533 (+) True G144210
TU181537 lncRNA downstream 100654 9948410 ~ 10015424 (+) False AMCG00004935
TU181539 lncRNA downstream 154642 10002398 ~ 10015424 (+) True AMCG00004935
TU181740 lncRNA downstream 1148626 10996382 ~ 10997606 (+) True G144512
TU181765 lncRNA downstream 1288001 11135757 ~ 11139343 (+) True G144534
TU181789 lncRNA downstream 1350557 11198313 ~ 11199835 (+) True G144549
AMCG00004930 mRNA upstream 63705 9763519 ~ 9779724 (+) True AMCG00004930
AMCG00004921 mRNA upstream 95874 9746540 ~ 9747555 (+) False AMCG00004921
AMCG00004929 mRNA upstream 154638 9685517 ~ 9688791 (+) True AMCG00004929
AMCG00004924 mRNA upstream 159306 9663323 ~ 9684123 (+) True AMCG00004924
AMCG00004923 mRNA upstream 185426 9653584 ~ 9658003 (+) True AMCG00004923
AMCG00004932 mRNA downstream 828 9848584 ~ 9888182 (+) True AMCG00004932
AMCG00004936 mRNA downstream 90665 9938421 ~ 9941239 (+) True AMCG00004936
AMCG00004935 mRNA downstream 150174 9997930 ~ 10011023 (+) False AMCG00004935
AMCG00004934 mRNA downstream 202302 10050058 ~ 10116505 (+) True AMCG00004934
AMCG00004945 mRNA downstream 757891 10605647 ~ 10607897 (+) True AMCG00004945
TU180912 other upstream 2112429 7729389 ~ 7731000 (+) False AMCG00004870
TU180621 other upstream 4419308 5423703 ~ 5424121 (+) True G143626
TU180426 other upstream 5471340 4371709 ~ 4372089 (+) True G143471
TU180351 other upstream 5733774 4109022 ~ 4109655 (+) True G143404
TU180311 other upstream 5893592 3949426 ~ 3949837 (+) True G143366
TU181952 other downstream 1814925 11662681 ~ 11663368 (+) True G144677
TU182286 other downstream 2932824 12780580 ~ 12781170 (+) True G144940
TU183002 other downstream 5536487 15384243 ~ 15384612 (+) False AMCG00005105
TU183561 other downstream 7917501 17765257 ~ 17771525 (+) True G145932
TU184056 other downstream 9731817 19579573 ~ 19579807 (+) True G146305

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
striped catfish (Pangasianodon hypophthalmus) TU390972 True 8320 lncRNA 0.43 2 NC_047616.1 10362531 ~ 10374057 (+)