RNA id: TU181541


Basic Information

Item Value
RNA id TU181541
length 611
lncRNA type inter_gene
GC content 0.57
exon number 2
gene id G144353
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 9937980 ~ 9938611 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTGGCCTGCGCCTCGTCCAGACTCTGGTCTGTAATGGTCATTATTTGCTGTAAAATGTCTCCAATGTCCTGTTTCCGTCCCCCCTCTCCGTCTGTCCCTCCGGTTCCGTCCTGCATGTGCTGGGACAGGCCGGGGTGTCCCGCCATCCCCACGCCGGCGTGAGAGTGCATCAGCCGGGGCTGCTCGTCCATCTCCGCCTGGGCTCTGCCTCACCTCCCCTAGACAGGCGCTGATCCCTCGGGCTGGAGGAAAAGCCTCAGAAATACCTTCGGATCTCTCTCTCTctctctctctctctctcccagctggTCGGAGTGAAATCTGATCTGAATTGCAGTCTTTAGCCACTCCTGCttggtaaaagaaaaaaaaaacaggttcaaCTTTCAATATGGGAGCCGATCCTGCTTTAATCACGGTGGCCTCGGCCTCGGGAAAACGCAAACTTTTTCCCTGGAAGGCGGTAATGCGTCTGGAGCCGGTGTGGAGCCCCTCCTTGCCGGGTACTTGCCTGGTTTCTGTCCCTAGCTTTTGTTTAGCAGCCCAGGACTGGCAACTGACACACAGCCCGGGTATGGAGCCCTGACTCCGCCCGAGAGACGCCATTGGCC

Function

GO: NA

KEGG:

id description
ko04140 Autophagy - animal

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU181471 lncRNA downstream 187202 9744869 ~ 9750778 (-) True G144295
TU181464 lncRNA downstream 237571 9699314 ~ 9700409 (-) True G144292
TU181451 lncRNA downstream 253861 9683052 ~ 9684119 (-) True G144286
TU181391 lncRNA downstream 386674 9548790 ~ 9551306 (-) True G144241
TU181395 lncRNA downstream 389574 9547203 ~ 9548406 (-) False G144241
TU181727 lncRNA upstream 1017474 10956085 ~ 10958001 (-) True G144502
TU181728 lncRNA upstream 1017474 10956085 ~ 10958001 (-) False G144502
TU181837 lncRNA upstream 1315004 11253615 ~ 11254574 (-) True G144587
TU181873 lncRNA upstream 1380515 11319126 ~ 11322006 (-) True G144612
TU181875 lncRNA upstream 1383972 11322583 ~ 11328481 (-) True G144614
AMCG00004931 mRNA downstream 90270 9842918 ~ 9847710 (-) True AMCG00004931
AMCG00004922 mRNA downstream 177956 9757227 ~ 9760024 (-) True AMCG00004922
AMCG00004919 mRNA downstream 379727 9553065 ~ 9558253 (-) True AMCG00004919
AMCG00004920 mRNA downstream 422658 9476837 ~ 9515322 (-) True AMCG00004920
AMCG00004917 mRNA downstream 480185 9432377 ~ 9457795 (-) True AMCG00004917
AMCG00004933 mRNA upstream 106605 10045216 ~ 10049989 (-) True AMCG00004933
AMCG00004937 mRNA upstream 176387 10114998 ~ 10123827 (-) True AMCG00004937
AMCG00004942 mRNA upstream 956327 10894938 ~ 10896806 (-) True AMCG00004942
AMCG00004954 mRNA upstream 1011664 10950275 ~ 10955865 (-) True AMCG00004954
AMCG00004956 mRNA upstream 1054074 10992685 ~ 10994644 (-) True AMCG00004956
TU181238 other downstream 1031386 8872885 ~ 8906594 (-) True G144115
TU181227 other downstream 1096992 8836360 ~ 8840988 (-) False AMCG00004894
TU181155 other downstream 1560979 8353989 ~ 8377001 (-) True G144050
TU180667 other downstream 4154796 5736809 ~ 5783184 (-) True G143659
TU180357 other downstream 5821566 4113747 ~ 4116414 (-) False AMCG00004819
TU182156 other upstream 2215514 12154125 ~ 12156378 (-) False AMCG00005011
TU182157 other upstream 2215514 12154125 ~ 12156378 (-) True AMCG00005011
TU182413 other upstream 3397598 13336209 ~ 13336746 (-) True G145046
TU182803 other upstream 5025968 14964579 ~ 14967623 (-) False AMCG00005077
TU183873 other upstream 9075936 19014547 ~ 19015663 (-) False AMCG00005214

Expression Profile