RNA id: TU181727


Basic Information

Item Value
RNA id TU181727
length 1229
lncRNA type inter_gene
GC content 0.46
exon number 2
gene id G144502
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 10956085 ~ 10958001 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTGTTTCAATAAGAacttacattttattcacataCAGGTACAAAGACGGTAAGCTGTGGTTTCAAAACATTCCTGAAACtgtaccaaaaaacaaaaagaggataaaataaaatccacatcAAGATTTCTTCtgacagatgtttttcttttttaaatacagatttcacAGCTGTGGGAACGACCACCGCTAGAATAGATCACCCTTGCCACACTTCATTTCAACAAATTGAAGACCTTGTGTGCCACCTAGAGGGGAGGAGAGCAAAACATGTACTTAGTGTCAAGGAACATAGAAAGCATTACATGTTTCATGGTATAAGTTTCTCATCAATATTTGAATAGCTGCATTTGAAAAATCCCAATAAAAGTGAGCTCGCTCTTTAGTTTTCCTGTTGCAAAGAGCTGAATGGAGTGGGACTCTATTCATTCTTGACCATTGTCTTGTGCTGCAGGACTAAGCACTTACACAGTGGTCCCTGGCATGAAGGAAGTCAAAGAGCTCCTCTGTGCACTCCTCCTCTGTATGTGAGCGGGAGCCCACCCTGGTCTCGCAGGCCTCCAGCCGCTCACGCGTGTGGACACAGTGCTCGGTCTGCTCACACTGCTCCCGGATGGTCGTCAGGGGGTCCTGCACATCACAAACAGGGGCGACAGAGAGCTGCTACACTGCCAACACTCTCCTAACACACAATATAGGAATTCACTTGTCCCATCACAGTTTTCTCAGAAGATGCAGAACATCTAGATAAGGTAGTCTCAGAGAAGGCTAACACACGGCCGGCTTCAAAGACCATATCCTTTAACCTAGTGTCAGCTCATAGTAAGTGAGGTCTGTCAGAAACTAGACCATTGCTTTCTTCTCTTTAGTTGCATAATCTTCAAAAGTCTGAGACTCAAATACTCACCACCatatcttcctcctcctcttcctcctcctcctCCTCATCGGGCTCTCCGTTTGTGAGCATTTTCTCCTCCCTCAATACCATTGTTAGCCTTGGTTTAGTGGTTTAATGCAATAAGCCGCTTGCAAGAACGTCCCTCACTTACAGTCTCCGCTTCTGTAGGACCTTCAGGTCACAAGCCGGAAATTTGCGAAAAACCCTACCGGAAGACAGATCTACCAATCCGGTACAGAGCCTCGTTGCGTACCtgtagcgcagattcccgcagttgTTGACAGATCTGCGCAATTCCTCCAATGGGGTTGGCCAATtcctgcagctctg

Function

GO:

id name namespace
GO:0042773 ATP synthesis coupled electron transport biological_process
GO:0042775 mitochondrial ATP synthesis coupled electron transport biological_process
GO:0006119 oxidative phosphorylation biological_process
GO:0006122 mitochondrial electron transport, ubiquinol to cytochrome c biological_process
GO:0022900 electron transport chain biological_process
GO:0022904 respiratory electron transport chain biological_process
GO:0045333 cellular respiration biological_process

KEGG:

id description
ko00190 Oxidative phosphorylation
ko04260 Cardiac muscle contraction
ko04714 Thermogenesis
ko05010 Alzheimer disease
ko05012 Parkinson disease
ko05016 Huntington disease
ko04932 Non-alcoholic fatty liver disease

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU181541 lncRNA downstream 1017474 9937980 ~ 9938611 (-) True G144353
TU181471 lncRNA downstream 1205307 9744869 ~ 9750778 (-) True G144295
TU181464 lncRNA downstream 1255676 9699314 ~ 9700409 (-) True G144292
TU181451 lncRNA downstream 1271966 9683052 ~ 9684119 (-) True G144286
TU181391 lncRNA downstream 1404779 9548790 ~ 9551306 (-) True G144241
TU181837 lncRNA upstream 295614 11253615 ~ 11254574 (-) True G144587
TU181873 lncRNA upstream 361125 11319126 ~ 11322006 (-) True G144612
TU181875 lncRNA upstream 364582 11322583 ~ 11328481 (-) True G144614
TU181877 lncRNA upstream 364582 11322583 ~ 11328481 (-) False G144614
TU181932 lncRNA upstream 541171 11499172 ~ 11501075 (-) True G144657
AMCG00004954 mRNA downstream 220 10950275 ~ 10955865 (-) True AMCG00004954
AMCG00004942 mRNA downstream 59279 10894938 ~ 10896806 (-) True AMCG00004942
AMCG00004937 mRNA downstream 832258 10114998 ~ 10123827 (-) True AMCG00004937
AMCG00004933 mRNA downstream 906096 10045216 ~ 10049989 (-) True AMCG00004933
AMCG00004931 mRNA downstream 1108375 9842918 ~ 9847710 (-) True AMCG00004931
AMCG00004956 mRNA upstream 34684 10992685 ~ 10994644 (-) True AMCG00004956
AMCG00004955 mRNA upstream 65617 11023618 ~ 11026477 (-) True AMCG00004955
AMCG00004947 mRNA upstream 146563 11104564 ~ 11105115 (-) True AMCG00004947
AMCG00004948 mRNA upstream 177734 11135735 ~ 11147198 (-) True AMCG00004948
AMCG00004949 mRNA upstream 193382 11151383 ~ 11163569 (-) True AMCG00004949
TU181238 other downstream 2049491 8872885 ~ 8906594 (-) True G144115
TU181227 other downstream 2115097 8836360 ~ 8840988 (-) False AMCG00004894
TU181155 other downstream 2579084 8353989 ~ 8377001 (-) True G144050
TU180667 other downstream 5172901 5736809 ~ 5783184 (-) True G143659
TU180357 other downstream 6839671 4113747 ~ 4116414 (-) False AMCG00004819
TU182156 other upstream 1196124 12154125 ~ 12156378 (-) False AMCG00005011
TU182157 other upstream 1196124 12154125 ~ 12156378 (-) True AMCG00005011
TU182413 other upstream 2378208 13336209 ~ 13336746 (-) True G145046
TU182803 other upstream 4006578 14964579 ~ 14967623 (-) False AMCG00005077
TU183873 other upstream 8056546 19014547 ~ 19015663 (-) False AMCG00005214

Expression Profile