RNA id: TU181765


Basic Information

Item Value
RNA id TU181765
length 3491
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id G144534
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 11135757 ~ 11139343 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCAGTACTTTTCATTAACTAAATTTCTTAAGATGACCAACATCAATCTGCCGAGGAATGGGACCGAAGGTATGAGAAAAATACCAGTCATCTTGCATTAAAACGTTTTaatacagagaaagaaaaggtcAATCAGTCAGAAATCAAAGAGAGCATCCATTTTCATTCCTACACACAAGAACGTaacaaatgaaacattaatGTGAGCTCCACAGAGGCATACAAACATCTCAGAAATGCATCACATTAGGCATAATGTATTCTGTGTTAAGGATCCACATGAACCAAAATCAGtctttgcaaagaaaaaagggCCTAACCTTATCTTTCTCACAAATCATGATGACAACGTCGTCTAGATGGAAGTTGAAAACGTTAATAAAAGCCATCGAATTCTACATCGCCACTTCAAACCACAACAGTCTTCTGAGAGGGGAAAATCATACTCCCAAATCGTATAAATACCACCCACTAAGTCCCAGCAATAcagaatgcatttaaacatcTGAAGTTCAGGGAAGGTTCAGCCAAGTTCATTCGCTGGACATGTAAGTTCAGTGTATTATATGATGAAAGATAATTTACTCTTTGTATCTCAAACAAAGAGCATCAAAAAAGGAAATCAGAAATATGAGAAACACATTTTAGCCCAGCTTCTCTACAAATAGTAACGCACTCAGGAACGTACTCTCtaaagcaggggttttcaaaccggtcctggagttccccctgccctgctggtttttgttccaaccgaggtcttaattgcttaattgaatccttaattgacctaacaaataaatataccattcaattaaataattaagacctaggttggaacaaaaaccagcagggcaggggatactccaggaccagtttgaaaatcCCTGCTCTAAAGGAACAAATTCTCTCTTATGTACTCAAAATGTATTGCTAACTTTAAAAGGCAAACATTAGGTTACTATACAGTTCCAAAATAGCTTATTTTAGATATTATTATAGTCAATTTGTTCAGCTTAAAACATATTCccagtactgtgcaaaacagTCAGAATTCCTTATCAAATAGGTTTTCATATTTGTTCAAACAAAATGGCAAATTTCCtgagaaggaaggaaggaaggaaggaaggaagaaacaaaaaaagaagaacaacgTTATCCATTACCTCTTCCCATTAGATAAATGTACTCTATTTCTAATGTATCAGCAGGTACTGATACAATTCACCAACACCAGCCACTGATTTGGTCAGTACTTGACTGACAAGCTTCAGATGAACACACAATAGATATTTTAACACACGGGGAAACACTTAAAACACCACAACTTTTTAATGCCTCAGTTTTCAGAGAATTGTTTATGAGCAAATGGTAAACCCTGATGAGTTGTGCTTTAAAAGAATAGCAAAGAAAccctgaaaatatatacataaaagaCTGGAAACTAAGAACAATTCCTTTCCTGCAAAAATGTCTTGAACAACTTTGACccacatacaatatatacatattgagagagagagcaggagtaATATGTACAGTCAATTCGATTTCACGTTAAGAATAtctaacaaaatattaatattttacaccGAAAGCAGTCATGTatcatacatataaaacaatgcaaaaatcGATATTGGGTAAGTGATAaggcaaatataaaaacaatactgaagTAGATAAAATCAAATCTGTTGGAAAGCATCTTTTTAATAGGAAGCCAAAGTTTAATTTGTGCAATACTGAGGTACTGTGCATGTTATTTCAATGATTGGCTTCTGTGCACACTGGAATACAAATCATAATTGTACCAACTTACACTTACGtccattgtgttttgtttttatcccaaAGGATACTGAAGCACTAGATATATTGGAGGAAACTCAATTTATCCAACACTGATATGAAAGGATTTTGGCAATAAACCTTGCAGTCCATTGGTGAAAGTACATAATATGTCCTTTCAGTATAATATCCTTCGCAGGTTTAAagatattactttaaatagacAGACAATGCCTGCCGCCTAAAGTACAACTGGCTTACTTATTCATTTCCCTTTCAAAGAATACCAacagaaatcattaaaatatctgatgaatgtttatttacttacattCAAACATCAggataaaatgcaaaatggctcatcaaagaatatataaaaatattaaagtgcttgtttgtttggtttgatgTTTTTGGTTATGTTTCTGCTGAAAAGGTTTTCTTAAgtcaagttaaaaataaataaatccaataaacctgtataaaacaattataaaataaaataaaaacagttaagaTCTGGGACTCACCATTTTAGGGCACAGGAAAACCTTcctttttaaaacctaaaatgaCTTTCCTAAAATAAGAGCTATAACTCTGAGTGGTTAACACTAAAACCGATTTTAAGAGCACAATCTGATTATTTTCTAGTATTCTAAACCTGACTTCTCCACCACATTAGCAGCAAACGTCTCATTGTCTTTAAATAGTTGCAAATGTAAAACCCCAAACCCTGTACAAGGCTACATATTTCTCATTGCTATATGCTCACTTACCATTAATGCACAATTGCCCAATTCACAGCTCGTTTTCAGAACAATATCGCATTCACacagttttataaaaataagCAGGTTAGAGGCAAGCGATCATGACATTCCTGGGATCCAGAGATTACGCACAATGAACGCCTTGTCACTGCCTGTTACTctgctaataaaaacataataatacagtaagtGATCGGTTACCAGCAACTTGAATTGCGTTTCAGCACGACGGCCTACTTAATCTGATTCTGGCCTGCTGCTTTAGCTTTTAAAAGTCATTTGTATCAATACCGAGTTGATTCACTGCCCTGTACGTACAGCAtacgttttatatattttcccagGTGAGGAAGTTTCAGCTCATTTATCACCAGGGCTGAAATGCACAAGAGATACCGTGAGGAGAAGATAAAGACCTGCAATAGACTTACCACTGGCCGGCACAACCAGGTGAACGCTAGCATTCGCACAACATGTTACAGTGCCGTCAAACAGCTAGGCTAGAACCAGCCCGGATGTGGCGGGGCGAGGCGGGGCGGTGAGGGGCATCAAGTGGCTTCGCCTCCGCCCGACACCTCGCTGGTCGATTGGAAGTCCTCGCGTTCCTCTTCGTGCTGGGAGAGTTGGCGGTTAAAGGCAATGGCATCCGCCGCAAACTGGGTGAGGTCTTTGGTGCTGCTTTTCCTGTAGAGCAGGTGGGAAAAAAAGACCATCATCAAACACGTGTctttaattgtgaaagatttaagCGAGACTGtttaaaagtgtgtatatatgattAGTATTGTTTATTGATCAGCAGTCgccccttacccagggtgacatATTACTCACTACCTTATGGTTACCTGAAACCATCACAAAGCAAGTCACATGTCAATGTAGGAAACACAATCTGACCAATATCAAGTTTGAATGGTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU181740 lncRNA upstream 138151 10996382 ~ 10997606 (+) True G144512
TU181537 lncRNA upstream 1120333 9948410 ~ 10015424 (+) False AMCG00004935
TU181539 lncRNA upstream 1120333 10002398 ~ 10015424 (+) True AMCG00004935
TU181492 lncRNA upstream 1288001 9843429 ~ 9847756 (+) True G144315
TU181789 lncRNA downstream 58970 11198313 ~ 11199835 (+) True G144549
TU181831 lncRNA downstream 105259 11244602 ~ 11247808 (+) True G144581
TU181861 lncRNA downstream 189934 11329277 ~ 11331419 (+) False G144603
TU181862 lncRNA downstream 189934 11329277 ~ 11331419 (+) True G144603
TU181933 lncRNA downstream 366339 11505682 ~ 11505883 (+) True G144658
AMCG00004950 mRNA upstream 126561 10999937 ~ 11009196 (+) True AMCG00004950
AMCG00004953 mRNA upstream 176974 10956236 ~ 10958783 (+) True AMCG00004953
AMCG00004952 mRNA upstream 185673 10943249 ~ 10950084 (+) True AMCG00004952
AMCG00004951 mRNA upstream 195113 10931893 ~ 10940644 (+) True AMCG00004951
AMCG00004940 mRNA upstream 255450 10877927 ~ 10880307 (+) True AMCG00004940
AMCG00004957 mRNA downstream 43914 11183257 ~ 11195427 (+) True AMCG00004957
AMCG00004958 mRNA downstream 62618 11201961 ~ 11214509 (+) True AMCG00004958
AMCG00004959 mRNA downstream 77849 11217192 ~ 11221581 (+) True AMCG00004959
AMCG00004967 mRNA downstream 108797 11248140 ~ 11252830 (+) True AMCG00004967
AMCG00004970 mRNA downstream 170617 11309960 ~ 11314366 (+) True AMCG00004970
TU180912 other upstream 3404757 7729389 ~ 7731000 (+) False AMCG00004870
TU180621 other upstream 5711636 5423703 ~ 5424121 (+) True G143626
TU180426 other upstream 6763668 4371709 ~ 4372089 (+) True G143471
TU180351 other upstream 7026102 4109022 ~ 4109655 (+) True G143404
TU180311 other upstream 7185920 3949426 ~ 3949837 (+) True G143366
TU181952 other downstream 523338 11662681 ~ 11663368 (+) True G144677
TU182286 other downstream 1641237 12780580 ~ 12781170 (+) True G144940
TU183002 other downstream 4244900 15384243 ~ 15384612 (+) False AMCG00005105
TU183561 other downstream 6625914 17765257 ~ 17771525 (+) True G145932
TU184056 other downstream 8440230 19579573 ~ 19579807 (+) True G146305

Expression Profile