RNA id: TU181862


Basic Information

Item Value
RNA id TU181862
length 1564
lncRNA type inter_gene
GC content 0.41
exon number 3
gene id G144603
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 11329277 ~ 11331419 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

acatatcacAAATATTCTGGTTATacttaacattttgtaaatgttgtaaaaGTTGATTTGTTGCAGTTATTGGaatagaaaataactgaatgtatTCGCAGCAgagtttataattaaatatcaaaaccaAGGGTACAAGATGGCTTTGTTTAACATTCTCAAccttacaaaatattttaactttaaaaactGTTGAATGGTTAAAAACAATTGGTATGCCTCAAATGAACTTTGTGTACGGGATTTTCCTGATGTTTTTCCCGGGTCAAGTACCATTTGGGGTGATTTACCCAGTGTCTGGATTACACTTAAAAAGCTTGGAACAGATTTCTGCTGTATGGAAAATAGTCCATCAATGATTGTTTGGggtataaaactatttttagaaCTACGTTACATGTTAGTGATTCAGGAGAACAATCTGAAAGATACCTCTGGTTTGGCACAGTAACACTGAAAATTTTAGTAGTTTTAAGAGGAAAATTAGTTGTATGAAAAGGAGCAATACATGTAAAACTGCTGTGATTTTAACCAGTGGAGGAATGACACAATTGCCAGACATTAGAATTCTTATTGCCCCACCCAAAGAAAAGCTGGAGATAGACTAGAGAAATGAAGGACAGAGGGGAAAGTTCCAGTAAAGCAGGGCATCAGTAGTCCTCAgctagaaaagaaaagagagacagTTAAGAGAAGTAGAGGTGAAATGAGAAGTGTGTACAGAGTTATATCTCCCCTGTACCCTTAAAATGGAATGTAATGGGTGAGCAAACGTGCAGTCAGACCAACGGACGCTTACTTTCAATGGTGAGAATACAGGTGCTGGCAGCCGTGCCTCTGCTGTTCACTGCTTTGCACATGTATTCTCCCTCATCCTCAGGGAAGGTCTCTGGCAGATAAAGACAGTACGTTTCTCCCCTCTCAATGTACTGATAGTCCTCACAGTCCTGCAGCATTTCCCCTTCAAACCACCAGGTCACCTCTGGCTTGGGCTCTCCGTTGATTTTGACCGTAAATCGAACTGGTTCAGCGTCGACCACCGACTGGTTTTTAAGAGGCTTTTTAAACCACGGGGCTCTGGATCTCGCGTGATCCTCTTCGTCTTCATATGTTGATCCATTGACAATgctcccttcctcctcctcctcatcgtccttttCTTTTGTAAAGCTGCATCAATCTCCTGCTGTTCAAACTGCATTCTCTGTAGTTTCTGCTCTTCgatcctctttctctcctcctcttccctggCCTTTGCCATTTGCTCAAATCGAGCCCGCATGTCCACTTTGTGTTTAAATGGAGCATCTTCTACTCGGGTGACTTCCCTTCTGCCCTCTTCATCTTCTCCTGGAATCTTTCGGCTTCCCTTTCTTTGATCTCAAGGTCGATAGCCTTCCTCCGTGCTCTCTCCTCCTCGATTTTCTTCTGAATTTCCTCTTCAGTGAGTTGCTTGATCTTTTCAaactttgattttaaattctTGGCTTGTATTGAGCCAGTTCTCTTCAGGTTCAACAATTCTTCATACTCTGTGCTTACAATTTcattgctttcatttatt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU181831 lncRNA upstream 81469 11244602 ~ 11247808 (+) True G144581
TU181789 lncRNA upstream 129442 11198313 ~ 11199835 (+) True G144549
TU181765 lncRNA upstream 189934 11135757 ~ 11139343 (+) True G144534
TU181740 lncRNA upstream 331671 10996382 ~ 10997606 (+) True G144512
TU181539 lncRNA upstream 1313853 10002398 ~ 10015424 (+) True AMCG00004935
TU181933 lncRNA downstream 174263 11505682 ~ 11505883 (+) True G144658
TU181943 lncRNA downstream 239517 11570936 ~ 11577247 (+) True G144668
TU181955 lncRNA downstream 338056 11669475 ~ 11671442 (+) True G144680
TU181956 lncRNA downstream 340136 11671555 ~ 11672485 (+) True G144681
TU181957 lncRNA downstream 341453 11672872 ~ 11673515 (+) True G144682
AMCG00004968 mRNA upstream 3614 11316701 ~ 11325663 (+) True AMCG00004968
AMCG00004970 mRNA upstream 14911 11309960 ~ 11314366 (+) True AMCG00004970
AMCG00004967 mRNA upstream 76447 11248140 ~ 11252830 (+) True AMCG00004967
AMCG00004959 mRNA upstream 107696 11217192 ~ 11221581 (+) True AMCG00004959
AMCG00004958 mRNA upstream 114768 11201961 ~ 11214509 (+) True AMCG00004958
AMCG00004969 mRNA downstream 33013 11364432 ~ 11389613 (+) True AMCG00004969
AMCG00004964 mRNA downstream 70114 11401533 ~ 11410342 (+) True AMCG00004964
AMCG00004965 mRNA downstream 141111 11472530 ~ 11482233 (+) True AMCG00004965
AMCG00004966 mRNA downstream 333427 11664846 ~ 11666101 (+) True AMCG00004966
AMCG00004976 mRNA downstream 351414 11682833 ~ 11716049 (+) True AMCG00004976
TU180912 other upstream 3598277 7729389 ~ 7731000 (+) False AMCG00004870
TU180621 other upstream 5905156 5423703 ~ 5424121 (+) True G143626
TU180426 other upstream 6957188 4371709 ~ 4372089 (+) True G143471
TU180351 other upstream 7219622 4109022 ~ 4109655 (+) True G143404
TU180311 other upstream 7379440 3949426 ~ 3949837 (+) True G143366
TU181952 other downstream 331262 11662681 ~ 11663368 (+) True G144677
TU182286 other downstream 1449161 12780580 ~ 12781170 (+) True G144940
TU183002 other downstream 4052824 15384243 ~ 15384612 (+) False AMCG00005105
TU183561 other downstream 6433838 17765257 ~ 17771525 (+) True G145932
TU184056 other downstream 8248154 19579573 ~ 19579807 (+) True G146305

Expression Profile