RNA id: TU181877


Basic Information

Item Value
RNA id TU181877
length 4662
lncRNA type inter_gene
GC content 0.36
exon number 3
gene id G144614
representative False

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 11322583 ~ 11328481 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTGATCTTTCATCTAAtacaagtttattattttttaacataggAACAATGTTGCACACACTTGGAACAGTTAAGTCTATAAAAGTACATTGTGGAATACACAGCACATTTCACCAGTGTTAGTTTACCTCTAATGCATGCTCCCCCTTTTGGATATTTCTCAGTATagcttctgtttttgtcttcttttctaCACCCCCAGGACTTTTCTGTTGAGAACACTTTCCTCAAAAGGAAACAGCATCtcatgcatataaataaaatatatgcagcCAAACACAAAAATGGGCAACAATTTATAAACTTGCAAGTTTAAACTAGATTTAAACATTAGACAGATTAGCCAATTAACTGCCACAATCTAAACTTTTCTACTAAACGTCATCAAAAAAGTTTCAAGtctactttaaaattaaatttctaAATTCTCATTATTGCAAACTGTTGTCAGGAATATTCAACACCTTATCTATAAGAAATGAGCACTGCCagttaaagaaaaagcatttgtaTAAGTctgcattgtttaaaataaactacattacaAGACACTGAACACCAATAGATTAATTTATGATACAAATGACATTTGTTAGCAATAAGCATTTCAGTGTAATAAACATGGATATGTACACAGACCCTAAACTGACAGAAAGAACATTGATTTCTCAATTATAACAATTCCTCAAGTTTACCTTATAACTGGAGCCCTTGATTGGTCTACGTTCACCAGTGGAATACACTCAAAGGATTCCTCCTTAGGGACAAACTATCTCGGGGCCTGATTCTATGAACTATGCTTGCAGCATCTTCAACactgtgtgtgaaaatgaaggcagcatttttaaaatgatataaacaCTATTAAAATGGGGCATCacaaagatttcaaaccaagaatacatacaaattagAAGTATATGCCATTAAATGTCTTAAACAGATTCATATATTAGGTTTAAAATACCGGCATCTCAAATTGCATGCAAAATATTATACTGATgtcaatgaaaagaaaagcaataccTATTTTATTGTGCATTATAAATCGCACTAAATAAAACTAGACTTACCATGAAACCAATGTACATAGTTAATCATGGAAATGCTGTACGTCTACAAGATCTACATTAAAGTCATACAACTGTATATTACTTATGCAATACGGAACTGGCAAATTGACAAGTTTCACAAACTCAAACCTATTCTGGAAATCAGTGCAGTCAAAAGGAAAGCAAGTGATATGTAACTACCTTAGCACAAATActttcatttcagttcaatatGCTTCAtgtgggagaaaaaataatgccATGCAATTGATTAATGTTCAGAACATATGCAATCTGAAATACATGAAGGCTGTTGCTACTCCTCTGATTCATTTCAAGATCAGACAATAGTTTGAACAAGAGTGGAATGCATCCCTATCAGCTTCACCATTTctcagaacaaaaacatttactggAACTACAAAGGCAAGTCAAGTCATTCACAGTTCAAACACTGGGTTCCTTAGGTTATGCTTACCTGTTAAACTGCAGCAGAACCTAAGGTGCAAGGTCGGGTGACACTGCAAAGATTAAATATTGCACTGTTTGCCATCAGTGAGGATTCAATCATTCATTTATGAATCAGTTCAACAGCCTCCAGTATAAAATGCTCTATCAAACAATGGCATgtcaaaaaaatgcaaatttgatCAGCAGAATAAGTCTACAATCCTAGAGAGCTTTTCTGGTAGTATCTAAGTAACTTAaacattgaaattgtttatCTATTATGCAAAACTTACTAGTGATATCTTACTGCATGAGAAAGCATTCATTACAGAttctttacatttctcagtgacATTTACTGGACCCTTGTTCACATGCTACAAATGTCATTAATCTGCTTAACGTTCAGATTCTTAAAACAGTTGCTAATTTCAATCTTGgaataattttgaattttagagtttaaattaaattgttacgTATACAACACATCTAAGGTGCAAACATTTCCTGTGAACAGAAAACCTACCAATTGCACATTCTAATATTTGCAAAGGATTTACTAAAAGCTTACACAGCACTCACATTTCAGAGTATCGAAAGGGAATGGTCCGACTGATGCATTCCTAAAAAAGCACAGTAGTCTAGAAAACAAACTACAGTACCACTTTTTAAGCAGTAACCTAAATGCACTCATTTTCCATGGTTATTGCAGCACAAGACCGTGaaaagtttacatttaaataaacttcaTAAGGCATGATGGAATACTTAAGGAAAGGAGTCACAGTAAAGGTTTAAATACACgcgttttagtattttaatacttacccagaaacagaacagagcctattttttcaataaatgcatatttcacGGCCACTGGAAAGACACTACATTTTCAGTCTCTcaaagaaatacattgaaagaGGAATTTGGTTCCATCAAAGTCGTGTACTTACAGCGTAATCTCTCCTTGAAGGAACAAATCAAGGATGATGTACAGCGAGGGCCTCCTCAGCCCTACAAATCTAGACCTACCCTGGATGAACTTTAACAGACAATGGCAAAGCAAATAGAttttgcattcatgtttttcttttaatcatagcaaatgtttttaaaaaaagccaGCAAATATACAAAGCAAACAATGGCTTTAAGACACCCAAATAGGAAGAACAAAATTCAGTACTTTTGCAaagaaattgtttctgttaatgtaaAAACACTTTTACCTGTGCTGTAAAAAAGCAGCAATTTCACTAAAATGTTCATAAAAAGTCACATTTAAGGGaacatttagtattttgtttctttttttgtttgcttaccGCTTTTCTAATCTTTCCTGTGAGGGAAAAAGTTGTTCTCTTATTATCAACAGTTCAGACTATCTCAAAGTCAGCAATCAGGTAAAGGTCATATACAGTACAACGAAAAATGCTACAGTACTAGGGCTGAAATTTTACTTGTATTGCCAACACTAACGCAGTATCATTACATACACATTAACCTATGGCTAAGTCACACAAATGAAAGCCTATATAACaaagattttttaaaaaaagacttacgcaagaaactgcatttttttttttttactcatttcatacgtttttaataaaaaaaagttctgttcacttaacttcaaataaaagcTGAGCATTTTTAAGAAGCTAAAAGAAAAGACTAAGATACTTGGGAAGTTGGAGTCCACTAATATTGACAGTCTGCATCGAGAATCTGCACGTTTGCTTTAGGCTATATCTACAATTGAACTTGCAAGGTTTAGAATTACCCAGATTTTCACCCCACTTACCAACACAGgaggtttcattttgttttattgcaaaacacaaaaacaggcattttaaaaaaaactgagatTTACATGGAAATTACTACAGTTTATAAACATGAGCATTGACCACATAATAGATGAAATACAGGAGCTGGAATGTCCAAATCTAGAACCACATACTAAAAACAAACCGTTCATTTTATACAGGAAAATTGCCTTCGGTGCTTTTATGAACTTTCGAAACTTTTAAACCAAAGAAATTAAGATCTTCATCAAGGCGTCTGCATCCATACATTTAACAAAGGTTTTTCGACAATGAAGCAAATACTCTATGTCCACTTCACATTACTGGCCCTGTGCAGAagaaatacataagaaatacatataagGTTAACAACAGGAACATCTACCaagcttaaaaagaaaacaaaagctaaaaaACCTGTAtaggggggaaaataaatgttagtaAGGTGCCAGTCCTTCTGGAGTTCTGCCACCTGGAGAGGAAACGTTAGGACATCACACAAGCCAATTTATTACACAAGCTTCTCTTAGCTGGACAACTAGTCTCGGAGATCAAAACCAAAAGATGCTGAGTATGGAAGACCACACGTTAACATTAGAGCAATTGTTTAGCAAGACGGTACCTGCTGTGCCTGTGGTGCAGGGGGGTGCGGGGGCATGGCCTGGGGGCTGGCCTGCCCGTAATAGGCTGCCTGCTGTCTGTAGTACTCAGCCCACGCTGCACTGTAATCGGGCTGGCCGCCTGCCTGGGATGCGGCAGCTGCAGCCGGAGCAGCTTGACCTTCTTGTTTTTTGTAGTACTCTTCCCAGGCCTTTGTGTAGTCCTGTGGTTGCTGCCCCAGCGTTTGTGGCTGCGATGGGTGCTTGAGGTTGTTGCTGATACTGAGAATAATAAGCTGCCCATGCTGCTGCATTAGCATCTGCTGCTGCTTTACCTGTGAAACATGCATATAAAACATGCAGAGCACAAAAGGAGTCATTCACAAGTGTACATAAACCCATAGTGGGATTagagcagtatatatatatataaaaaaaaactatccaaAGTATGAAAGCTTTAGTTTCTAAACGATTGTCGTTtgggatgtttttaaataaaattagggAACGCTCACTTACCGGGATCTTGTTGTCCCTGCTGCCAATGTGGGAAGCCATTTCCCCATCCCTGTGGCTGATATGGTGCAGGAGGAccactaaaacaaaaatcagaggATCAGCTCTGGAAACAGGCCAGAGGGTGGGGAATCGTACAACAATTTACATGTTAAGAGTTTTAAATCATACCTGAACTAGCAAAGGAAATTACATGAAAGTAACATTACAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU181873 lncRNA downstream 577 11319126 ~ 11322006 (-) True G144612
TU181837 lncRNA downstream 68009 11253615 ~ 11254574 (-) True G144587
TU181727 lncRNA downstream 364582 10956085 ~ 10958001 (-) True G144502
TU181728 lncRNA downstream 364582 10956085 ~ 10958001 (-) False G144502
TU181541 lncRNA downstream 1383972 9937980 ~ 9938611 (-) True G144353
TU181932 lncRNA upstream 170691 11499172 ~ 11501075 (-) True G144657
TU181934 lncRNA upstream 177197 11505678 ~ 11506002 (-) True G144659
TU181947 lncRNA upstream 242709 11571190 ~ 11572410 (-) True G144672
TU182132 lncRNA upstream 681437 12009918 ~ 12010371 (-) True G144821
TU182139 lncRNA upstream 695033 12023514 ~ 12029449 (-) True G144826
AMCG00004971 mRNA downstream 13340 11282626 ~ 11309243 (-) True AMCG00004971
AMCG00004960 mRNA downstream 59752 11254762 ~ 11262831 (-) True AMCG00004960
AMCG00004963 mRNA downstream 74829 11244611 ~ 11247754 (-) True AMCG00004963
AMCG00004961 mRNA downstream 79157 11217636 ~ 11243426 (-) True AMCG00004961
AMCG00004962 mRNA downstream 121583 11196475 ~ 11201000 (-) True AMCG00004962
AMCG00004973 mRNA upstream 762 11329243 ~ 11339610 (-) True AMCG00004973
AMCG00004972 mRNA upstream 14851 11343332 ~ 11361553 (-) True AMCG00004972
AMCG00004997 mRNA upstream 84418 11412899 ~ 11438182 (-) True AMCG00004997
AMCG00004999 mRNA upstream 123261 11451742 ~ 11462502 (-) True AMCG00004999
AMCG00004998 mRNA upstream 181739 11510220 ~ 11525189 (-) True AMCG00004998
TU181238 other downstream 2415989 8872885 ~ 8906594 (-) True G144115
TU181227 other downstream 2481595 8836360 ~ 8840988 (-) False AMCG00004894
TU181155 other downstream 2945582 8353989 ~ 8377001 (-) True G144050
TU180667 other downstream 5539399 5736809 ~ 5783184 (-) True G143659
TU180357 other downstream 7206169 4113747 ~ 4116414 (-) False AMCG00004819
TU182156 other upstream 825644 12154125 ~ 12156378 (-) False AMCG00005011
TU182157 other upstream 825644 12154125 ~ 12156378 (-) True AMCG00005011
TU182413 other upstream 2007728 13336209 ~ 13336746 (-) True G145046
TU182803 other upstream 3636098 14964579 ~ 14967623 (-) False AMCG00005077
TU183873 other upstream 7686066 19014547 ~ 19015663 (-) False AMCG00005214

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
eurasian perch (Perca fluviatilis) TU155232 True 3389 lncRNA 0.38 1 NC_053122.1 16094010 ~ 16097398 (+)