RNA id: TU181955


Basic Information

Item Value
RNA id TU181955
length 1968
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G144680
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 11669475 ~ 11671442 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTAAATAATGCAAGgacaatttatttcaattattccCATACATAATAAATCCATATATCTATGTACATATTATATAGGTAGATCTATAGATatatctttctctttttcatgtaAGGTATCAGTATTTTAATGCCAATATGTTTTCCTAAAATACACTGATTCAATTTCCATTGCAGAGTGAAAATAAGCAATGCAGACATTAGTGACACTTTATACTGGACTTCTCTTTATCTGGACTTACAAATAATCGTGGTTTTTGATATTACTTTACAACATGTGAGCCTGAATCTAGTTGGAGTTTGGCTATGAACCTTCTTTTGCAACAGAGGATGAAAAAGAATGGGAAATGCATTGCTCCGGCAGCAGAGCCAAGTTAATGAAGACACCCTGTGGATGCAGACAAGCCCAGGCCTGCTCATTTtgatgaaaaaaactaaataaaaacacagaaaacagaatgaGGCTTCTTCTGAAGCTAGGCAGACTGAGCAGCTGCTAAATTATGAATGTGCTTTCATTCTACCAGTCAGATCTACTGCTATTCCAGGAGGTTCTGAGATGACTagattaaacacaaataattaaggATTAGGACAGAacataacacaaaatacatggGTGGTAGGTGTAATGGCCATGCTATTGGCAGAATTTAATCATATTTCTCACCACggttacaaaatataaactgtaACAAAAGGATAACCATAAAGGTCTGATTTTTAAACTCTGAAAACAGCTGTGTGGTAAACGCTGGGTTAAATGAAGACCTGAAATcagtacattttacagatttctgTGGAACAGAGATATTTGTCATTAGGTTATAATTTGTCAGTAATATTGTGGTATTTATGTTCTATACAGTGAAATCATCAAACGGAATATAACAATTTCTAATGTCCTTACATTTTTACTCAAGCCATCACCAAAGTGACAATGCAGTGACTATATCCTGTCATTGATGCAATACGTGATATCCAAATCCAGTAACAGGACAAACGCACATTTCAGAATTAAGACTATCAGGGCTGGATGATCAAGGCTTCAGGCTGTGTGTAACTAACAACAATCATATCACCACCAATGTACAACGTGGTTTTCAACTTAAAGAGTTACTTTGTGCTTGAAAATCATGCGAGTATTGATATGTGAGATGATATTAAGGTACACAGAGAACACAGTCCAATGAGATAAAGATGGCAAGATTAGCTGCTCTGTGGTAAACTAACAGAGTGTAGGATAACTGatgacagattaaataaatacagtaccaTAGTAATATTTCTACTTTACAAAACATGTCTCCTGAAATGTATATAACATGCCACTCAAGTGTGTCTGATGCttatagaagaaaaataaaaacatgatctgAAGATTCATATTGTCGAGTGAATGTCTGTAAATGTCCACCTAAACTGTGAATTttctcaattattcaattaaaattgcATATTCTGTCAGctaaaatatgaacacaaactataaactaaatataatgGTTAAAACTACTGCACTCTAttctcacttttttttccattatattgCAGTTTCCCAAATCCACTAAAACCCTTGTAGTCTATCAGACAATgattataaagtgttatttgACACACGTGAGATTAAATTAAGGTCATATTGTAAACATATGAATGTAACTCTTTAACGTGTTCTTAATGAATCCAAGAGCTGCTCCATGCACAGCTCCCTCCCCGGTGGGAAAATACTTTAAAGCACCAAGTCCGCTGTCTGCAATTCTTTATTCTCCACAAGGCCAGGGCTCAGTGGAAATGAGAACTAGCTTAAAATGTCAGGGTGCAGATTGATTCTCTGGAGGACGTCCTCTGGCATACAAAACACCGGATTCACCGCCTTGACCTGCTCGTCTCCCAGCAGTGATAATCCCGCGATCCCGAACAACGTGTGGAAGGGATCCACCTGGCAGGGAAGAGGATATGAAAGGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU181943 lncRNA upstream 92228 11570936 ~ 11577247 (+) True G144668
TU181933 lncRNA upstream 163592 11505682 ~ 11505883 (+) True G144658
TU181861 lncRNA upstream 338056 11329277 ~ 11331419 (+) False G144603
TU181862 lncRNA upstream 338056 11329277 ~ 11331419 (+) True G144603
TU181831 lncRNA upstream 421667 11244602 ~ 11247808 (+) True G144581
TU181956 lncRNA downstream 113 11671555 ~ 11672485 (+) True G144681
TU181957 lncRNA downstream 1430 11672872 ~ 11673515 (+) True G144682
TU181959 lncRNA downstream 2797 11674239 ~ 11676905 (+) True G144683
TU181958 lncRNA downstream 4482 11675924 ~ 11676905 (+) False G144683
TU182090 lncRNA downstream 427922 12099364 ~ 12176426 (+) False G144788
AMCG00004966 mRNA upstream 3374 11664846 ~ 11666101 (+) True AMCG00004966
AMCG00004965 mRNA upstream 187242 11472530 ~ 11482233 (+) True AMCG00004965
AMCG00004964 mRNA upstream 259133 11401533 ~ 11410342 (+) True AMCG00004964
AMCG00004969 mRNA upstream 279862 11364432 ~ 11389613 (+) True AMCG00004969
AMCG00004968 mRNA upstream 343812 11316701 ~ 11325663 (+) True AMCG00004968
AMCG00004976 mRNA downstream 11391 11682833 ~ 11716049 (+) True AMCG00004976
AMCG00004975 mRNA downstream 45880 11717322 ~ 11757176 (+) True AMCG00004975
AMCG00004974 mRNA downstream 88479 11759921 ~ 11782145 (+) True AMCG00004974
AMCG00004993 mRNA downstream 167504 11838946 ~ 11840697 (+) True AMCG00004993
AMCG00004991 mRNA downstream 169724 11841166 ~ 11850241 (+) True AMCG00004991
TU181952 other upstream 6107 11662681 ~ 11663368 (+) True G144677
TU180912 other upstream 3938475 7729389 ~ 7731000 (+) False AMCG00004870
TU180621 other upstream 6245354 5423703 ~ 5424121 (+) True G143626
TU180426 other upstream 7297386 4371709 ~ 4372089 (+) True G143471
TU180351 other upstream 7559820 4109022 ~ 4109655 (+) True G143404
TU182286 other downstream 1109138 12780580 ~ 12781170 (+) True G144940
TU183002 other downstream 3712801 15384243 ~ 15384612 (+) False AMCG00005105
TU183561 other downstream 6093815 17765257 ~ 17771525 (+) True G145932
TU184056 other downstream 7908131 19579573 ~ 19579807 (+) True G146305
TU184341 other downstream 8510912 20182354 ~ 20184643 (+) True G146519

Expression Profile