RNA id: TU181959


Basic Information

Item Value
RNA id TU181959
length 1638
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G144683
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 11674239 ~ 11676905 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGTACAGCACTCAGAGTGTACAGCAAGTGGGGGTCATGCCCTATACTAGCACTAATGCCACCACACTCATGCTGGCAGGATTTGATGAACTCTATAATCTCTTCCTTGTTCATCCGATCCAGTTGCCCCATTAGGTCCATTACGGTTAAACCCCAATAGATGCCGCTCATTCGCAGATATTCTGACAATGTGTATTCCTGGTGGAGAgaaaaaaccaaaacattttcaaatctaaAATAACCCTAATTCCAAATACATGGGAACCCTGCCAATCATATTATTAAAGATGTTTTAAGCAAATCTCACAATCTTTCCACCGTGAACACTGTCTCACTTGTACAAATACATGATACATACATAGTCATCCTTTTTGGATCCATAGGCTGCAATGTAGTCTGCATGCTTTTCCAGCAGGACTGAATTTGGAGCATCGGGCTTAATCACAACATCTTTAACCTGAGTGccctggagaaagaaaaaaaaaacagattagtcataatacagttttaaaatcagTGACCATGTTTCACAATCAGTGCTGGGTAAAATATCCGagcataaaacacatttaaacgcAGATCCAATGCAGCATTAAAGCCAATCATCTCCTGATATTGGAGTCAGTGTTTTAATATAGTCTATATAACCAAATCAACTGCGGGTTGCAAAGCTATGAACCCATACAATGCAGGCTAATCTGATAACATCTGGGTGTTTAAAAAGCGTTGCTGTGGAGAGGCCGGCAGGATGTAGTGTATATTGTTTTACGACACCGAAACCGTCGTGGTTTGTTATTGCAATACATATGACACAGTATTAGTTATTTCGCTCTTTCCGTTATCAGGCATGAACAAGTATTCACGTATTGTGCGCCCAGCAGATACAATGAACATTAGTTATTAGTGTCACAATACGTAGATCTATTAAAAATTAACTGTTCAGCAGGATTTGCCGAGGCATGTCACTTCCCAACCGGGATTTCATCATCTTTCAGGTCGTAAACATACACTAGCCGGCTTTCTTTACGTATTTATTGAAAATGCGTCTTTATTCGTAATGTTTcactcatttgtgtattttcttttaacggGAGTAttgtaagaaaagaaaagagaggcCAAACTTACCATTCTCGGCTGATGTCCTAGACCGACTCCCGTCCCACAATTTCTACGTCATCCAAGGGCGATAAACAGCCCTGGAGCGCAGCGGCGCCAGCACTGTACATACATGATCATTTCCATGGACATCATATCCATGGAGTCAACTAGTCTTGCTAAATAAGCCGAAATGACGAACCCGGGGGATTATGAATGCAGTTTGACAGCACAGACTGAAATGGATATTCACTGTTGAATCCGTTCCCTCCAAATATCTGAACCGCATCACTTGCGACTTGGTTTGCAATGTCACCGGCAAACGCCTTGGCAATGGAGGCGAAGTAAGTGTTTCTGCGTCCTTCATCTACTTCCCAGGCAGAGCGCTGATAAGCCATCCTGGCCAGCTCCACTTTCATTGCCATCTCTGCCAACAAGAAGGAGACTGCCTGGTGCTAAAGAACAGAACAATGTGAACTCACTGAACAATTGGTTCTATTATAACAAAGGTTTCAatgctgaaattattttttaaagtgac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU181957 lncRNA upstream 724 11672872 ~ 11673515 (+) True G144682
TU181956 lncRNA upstream 1754 11671555 ~ 11672485 (+) True G144681
TU181955 lncRNA upstream 2797 11669475 ~ 11671442 (+) True G144680
TU181943 lncRNA upstream 96992 11570936 ~ 11577247 (+) True G144668
TU181933 lncRNA upstream 168356 11505682 ~ 11505883 (+) True G144658
TU182090 lncRNA downstream 422459 12099364 ~ 12176426 (+) False G144788
TU182091 lncRNA downstream 422459 12099364 ~ 12192733 (+) True G144788
TU182111 lncRNA downstream 517221 12194126 ~ 12194338 (+) True G144804
TU182112 lncRNA downstream 519367 12196272 ~ 12196773 (+) True G144805
TU182118 lncRNA downstream 562586 12239491 ~ 12242198 (+) True G144809
AMCG00004966 mRNA upstream 8138 11664846 ~ 11666101 (+) True AMCG00004966
AMCG00004965 mRNA upstream 192006 11472530 ~ 11482233 (+) True AMCG00004965
AMCG00004964 mRNA upstream 263897 11401533 ~ 11410342 (+) True AMCG00004964
AMCG00004969 mRNA upstream 284626 11364432 ~ 11389613 (+) True AMCG00004969
AMCG00004968 mRNA upstream 348576 11316701 ~ 11325663 (+) True AMCG00004968
AMCG00004976 mRNA downstream 5928 11682833 ~ 11716049 (+) True AMCG00004976
AMCG00004975 mRNA downstream 40417 11717322 ~ 11757176 (+) True AMCG00004975
AMCG00004974 mRNA downstream 83016 11759921 ~ 11782145 (+) True AMCG00004974
AMCG00004993 mRNA downstream 162041 11838946 ~ 11840697 (+) True AMCG00004993
AMCG00004991 mRNA downstream 164261 11841166 ~ 11850241 (+) True AMCG00004991
TU181952 other upstream 10871 11662681 ~ 11663368 (+) True G144677
TU180912 other upstream 3943239 7729389 ~ 7731000 (+) False AMCG00004870
TU180621 other upstream 6250118 5423703 ~ 5424121 (+) True G143626
TU180426 other upstream 7302150 4371709 ~ 4372089 (+) True G143471
TU180351 other upstream 7564584 4109022 ~ 4109655 (+) True G143404
TU182286 other downstream 1103675 12780580 ~ 12781170 (+) True G144940
TU183002 other downstream 3707338 15384243 ~ 15384612 (+) False AMCG00005105
TU183561 other downstream 6088352 17765257 ~ 17771525 (+) True G145932
TU184056 other downstream 7902668 19579573 ~ 19579807 (+) True G146305
TU184341 other downstream 8505449 20182354 ~ 20184643 (+) True G146519

Expression Profile