RNA id: TU182132


Basic Information

Item Value
RNA id TU182132
length 454
lncRNA type inter_gene
GC content 0.49
exon number 1
gene id G144821
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 12009918 ~ 12010371 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGCAGCTCCTAAAGCAGGATCGAAACAGGAAAGCCACAATCCAGCAGCTTCTACAGACTACCTTTAAATCATTCATTTCTAAAGACCTGAACCGAAATAGTTTTTGATCAGTTCAGCTAGTTCATTTCCCTTATCGTAAGGAGAGACTTGGGGGAGAGCGGGCAGTTATGATGATTAGCTCCTATTGACACAGTTGTACTCGTCTGACCAGTCGGAGCACTGCTGCTGGCGGTCCTGACACAGGGAGCGCGGGACGCACTTGCAGTATGTGTACACCACCGGCATGCAGCTCCACCAGTCCGGCCCGCAGGGGGGACAGTCCGCATCTGCCAGGGAACACAAACCACCAGTTTGCTCCAAAAGTACCACTTTTCTTCTGTGAAAGAGAAACTACACTTCTTGATTGATGAGTCATGTAATTCTAGACTCTCGACAGGAAACATTTGGAAAGTCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU181947 lncRNA downstream 437508 11571190 ~ 11572410 (-) True G144672
TU181934 lncRNA downstream 503916 11505678 ~ 11506002 (-) True G144659
TU181932 lncRNA downstream 508843 11499172 ~ 11501075 (-) True G144657
TU181875 lncRNA downstream 681437 11322583 ~ 11328481 (-) True G144614
TU181877 lncRNA downstream 681437 11322583 ~ 11328481 (-) False G144614
TU182139 lncRNA upstream 13143 12023514 ~ 12029449 (-) True G144826
TU182205 lncRNA upstream 292208 12302579 ~ 12302836 (-) True G144877
TU182206 lncRNA upstream 292594 12302965 ~ 12303263 (-) True G144878
TU182207 lncRNA upstream 293040 12303411 ~ 12303620 (-) True G144879
TU182208 lncRNA upstream 294252 12304623 ~ 12304887 (-) True G144880
AMCG00004989 mRNA downstream 6714 12001111 ~ 12003204 (-) True AMCG00004989
AMCG00004990 mRNA downstream 16821 11990650 ~ 11993097 (-) True AMCG00004990
AMCG00004988 mRNA downstream 25054 11981168 ~ 11984864 (-) True AMCG00004988
AMCG00004980 mRNA downstream 95493 11898180 ~ 11914425 (-) True AMCG00004980
AMCG00005002 mRNA downstream 127211 11879855 ~ 11882707 (-) True AMCG00005002
AMCG00004987 mRNA upstream 982 12011353 ~ 12019759 (-) True AMCG00004987
AMCG00005011 mRNA upstream 125007 12135378 ~ 12156367 (-) False AMCG00005011
AMCG00005010 mRNA upstream 146209 12156580 ~ 12159972 (-) True AMCG00005010
AMCG00005009 mRNA upstream 153459 12163830 ~ 12172230 (-) True AMCG00005009
AMCG00005004 mRNA upstream 173569 12183940 ~ 12199070 (-) True AMCG00005004
TU181238 other downstream 3103324 8872885 ~ 8906594 (-) True G144115
TU181227 other downstream 3168930 8836360 ~ 8840988 (-) False AMCG00004894
TU181155 other downstream 3632917 8353989 ~ 8377001 (-) True G144050
TU180667 other downstream 6226734 5736809 ~ 5783184 (-) True G143659
TU180357 other downstream 7893504 4113747 ~ 4116414 (-) False AMCG00004819
TU182156 other upstream 143754 12154125 ~ 12156378 (-) False AMCG00005011
TU182157 other upstream 143754 12154125 ~ 12156378 (-) True AMCG00005011
TU182413 other upstream 1325838 13336209 ~ 13336746 (-) True G145046
TU182803 other upstream 2954208 14964579 ~ 14967623 (-) False AMCG00005077
TU183873 other upstream 7004176 19014547 ~ 19015663 (-) False AMCG00005214

Expression Profile