RNA id: TU182222


Basic Information

Item Value
RNA id TU182222
length 1046
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G144893
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 12367423 ~ 12368468 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ACAGTGAAGTCTATGCCTGAGATCAGCAGGTTCATGAAACTTCTTCAGTTGTGTCCTAATTTAAAGAGACTGTCagtgtcaaatgtatttatttattagatgaCATGGACAAGACTTTATTCTGATCTCTGAAACTAGTCTATACTTGATGAAATAACTTTAAAACTCATGCAAGctgaaaatgacatttaatatgatatttttctgaacaaaaacaaacttatcTACACAGACAGGCTCAGGTGGCTCGGGCTCAGCAGAGAACTGGAGGGATGGATGTCATATTGTCCCAGTGTGCTCCTCTCTCCTGCTTACTCAGTGCTAGCCTTTATAGACATGTGCCTGAATGATGAGGGGTACAGGTCAGGGAACCATTGTGACACAGAGAGGTAGTTTAGTCTGGAAACTAGACGGGCCATTTTCACTCCTTCGGCAAATatctaaaaaacattttaaaacatacccCCTTCACTATagcagagactgagagacaagataaacaggaagtcatcaAGGCTCTGCCCCACAGATGGTCAGTCTAACGCTACGTTACCTTTCCCCCCGGCACTTAATACATGCGTCttaaatgctatttaaaaaaattatacattccCAGAAAAGGTCACTTCTTTAGGGTAAATTACAGTTGATCAAGGTTCATTTTATCTTTCAgagtagaaaaaacaacagcaaatgaAACGGTGGACTGGAATGCGAGTGAGAGTCCAGGTGGTGTTGGGGATGGTGTGGTTGAGACTGAAACGGGAAGTGGCGAGCGAGTGTTGGAGTTGTGGCCAGCGGTGTGGGCAGGACTTCCTCTTCGAGAGACGGGCGGGCGGTCTGGCAGGGAGCAGCTGGCCTGTCCGCTGATGGATGGGAACCCCAGGACAGCTGAGAGGCTTTAGGAAGCTGCCGTGGCTGGTTTAACAGAGACCAGTCCATGCCCTTTCCCTCAGCTGGGTTCCTCCTTGACgcatttttaaatctcttcACAGTTTCTTGGCTTTCTTTATAGAGGAAGAACTGGAGGCCGATTCCCTTCGTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU182217 lncRNA downstream 19095 12346141 ~ 12348328 (-) True AMCG00005022
TU182208 lncRNA downstream 62536 12304623 ~ 12304887 (-) True G144880
TU182207 lncRNA downstream 63803 12303411 ~ 12303620 (-) True G144879
TU182206 lncRNA downstream 64160 12302965 ~ 12303263 (-) True G144878
TU182205 lncRNA downstream 64587 12302579 ~ 12302836 (-) True G144877
TU182259 lncRNA upstream 247247 12615715 ~ 12615950 (-) True G144920
TU182287 lncRNA upstream 412105 12780573 ~ 12781170 (-) True G144941
TU182307 lncRNA upstream 444509 12812977 ~ 12815518 (-) True G144954
TU182393 lncRNA upstream 889454 13257922 ~ 13258861 (-) True G145031
TU182539 lncRNA upstream 1693253 14061721 ~ 14062111 (-) True G145129
AMCG00005022 mRNA downstream 20933 12344671 ~ 12346490 (-) False AMCG00005022
AMCG00005019 mRNA downstream 22755 12340168 ~ 12344668 (-) True AMCG00005019
AMCG00005018 mRNA downstream 51771 12310351 ~ 12315652 (-) True AMCG00005018
AMCG00005020 mRNA downstream 66914 12298967 ~ 12300509 (-) True AMCG00005020
AMCG00005017 mRNA downstream 69641 12289910 ~ 12297782 (-) True AMCG00005017
AMCG00005012 mRNA upstream 75884 12444352 ~ 12454372 (-) True AMCG00005012
AMCG00005029 mRNA upstream 411803 12780271 ~ 12801667 (-) True AMCG00005029
AMCG00005026 mRNA upstream 450142 12818610 ~ 12842175 (-) True AMCG00005026
AMCG00005027 mRNA upstream 535997 12904465 ~ 12907715 (-) True AMCG00005027
AMCG00005025 mRNA upstream 571047 12939515 ~ 12948955 (-) True AMCG00005025
TU182156 other downstream 211045 12154125 ~ 12156378 (-) False AMCG00005011
TU182157 other downstream 211045 12154125 ~ 12156378 (-) True AMCG00005011
TU181238 other downstream 3460829 8872885 ~ 8906594 (-) True G144115
TU181227 other downstream 3526435 8836360 ~ 8840988 (-) False AMCG00004894
TU181155 other downstream 3990422 8353989 ~ 8377001 (-) True G144050
TU182413 other upstream 967741 13336209 ~ 13336746 (-) True G145046
TU182803 other upstream 2596111 14964579 ~ 14967623 (-) False AMCG00005077
TU183873 other upstream 6646079 19014547 ~ 19015663 (-) False AMCG00005214
TU184064 other upstream 7201591 19570059 ~ 19573318 (-) True G146313
TU184128 other upstream 7389764 19758232 ~ 19761446 (-) True AMCG00005240

Expression Profile