RNA id: TU182289


Basic Information

Item Value
RNA id TU182289
length 1475
lncRNA type inter_gene
GC content 0.33
exon number 1
gene id G144942
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 12782170 ~ 12783644 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

aaaaactgtgtgcaagtgaacctagaagaactgatgctgttttgaaggcaaatggtgtcacaccaaatatggatttgatgcagatttttcttctgttcactcactttgcatttagttaactgagaaatacaatctattaacatgtctatttttgaaagcattcttactttacagcatttcttcatACCTGCCTataacttttgcacagtactgtataacagagtctgtatataatacatgttAAGTTAATACCAGTCCTTTTCACAGTATGTTCTGGGTATGAGTGTCTAACACATAAACCATAGTTATATTTGTAAcattcatacatatatgtatatataatgtgtgtgtgtgtgtgtgtgtatatagacacacatatatacatatacacacagtacacttCCTAATAGGTCCCTCAATGCACAGGTCCAACCAGTGCACCTTGTTTTAAAAGGTTACTGCTGGGAGAATACAATATTAAGTAACAAAGCTAACCGATAACTACACATTctgtaaaaacttttttttttttttttttttttaaggatgttACCTCACTTTCATGTTTAGTGTAGTTTTTATAGATTTACCCAGCATGGGCCTATGTTTTTTCTGTATGACCCTAATATTCTCCTTGAGGTTTAATGCTGCTCCTGAGCAGGAACAGTGGAGTTAATTATAGGAACTATTGGGTTACCTGTAGTTACTTGAAGTGCACAGGTGCTATTATTGAATACCAttgataaacaaatatattctcaACTAAGCACAAAAAAGGACCTGCAAAAACGTTTcagtttaattgctttaaaggcacatctgcaaaataattatatacaaaattCTAAAACATACCGTGATACTGATCTCTATCTGCACAGAGCAGTATGTTTgaaacttacatttaaaaagagatcTAACCAAAAACACATCCAATACGTTTAACCAATTATATAGTACTGCCATAACTGTCTTCCTGTTATTTAAACTATATTCTTAAGCCATGAATTggataaaatgtaatacttgATATTAATAAAGCCgtacttttaattgtttacttCCACTGTATATTTAGCAGCTGGGTCTCCGCTCCCAttataaatcaatgttttctCTTCAGATTTCTTCTCTTACACTAGTGGTGTTTGTGTGGTGGTGGTAGGAAGGTGGTTCACCTCATTTTTAAAGTAGAGCAACAACTCCAGTCAAACCTACTGTTTTGTTAACAGCAATGGATTCCCTTGTGTTTTCCTCATTCAGTGCtgaatgcatttgtgtgtcCATTATAAAACAGCATGACTATAAGTGTATGTATTGTGTCACAATATCCaatgtaaatttgtatttttaattttaaaaatgggaGTGCAAGCtagctttaaagaaaaaactctAGATGACGTGTAAAACAATGCTGTATTGTTACAAGATCTTTTTTGTTAGACATGTGAATAAAGAATAGCAATTAACCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU182246 lncRNA upstream 165238 12616638 ~ 12616932 (+) True G144908
TU182120 lncRNA upstream 524301 12256288 ~ 12257869 (+) True G144811
TU182118 lncRNA upstream 539972 12239491 ~ 12242198 (+) True G144809
TU182112 lncRNA upstream 585397 12196272 ~ 12196773 (+) True G144805
TU182111 lncRNA upstream 587832 12194126 ~ 12194338 (+) True G144804
TU182313 lncRNA downstream 163538 12947182 ~ 12948973 (+) True G144960
TU182366 lncRNA downstream 421696 13205340 ~ 13208217 (+) True G145007
TU182378 lncRNA downstream 474073 13257717 ~ 13259076 (+) True G145017
TU182404 lncRNA downstream 531734 13315378 ~ 13317852 (+) True G145039
TU182456 lncRNA downstream 789598 13573242 ~ 13573460 (+) True G145067
AMCG00005028 mRNA upstream 1718 12769739 ~ 12780452 (+) True AMCG00005028
AMCG00005024 mRNA upstream 82709 12696312 ~ 12699461 (+) True AMCG00005024
AMCG00005023 mRNA upstream 174553 12574253 ~ 12607617 (+) True AMCG00005023
AMCG00005013 mRNA upstream 301745 12473551 ~ 12480425 (+) True AMCG00005013
AMCG00005015 mRNA upstream 413774 12348544 ~ 12368396 (+) True AMCG00005015
AMCG00005030 mRNA downstream 19641 12803285 ~ 12810937 (+) True AMCG00005030
AMCG00005031 mRNA downstream 166859 12950503 ~ 12954868 (+) True AMCG00005031
AMCG00005032 mRNA downstream 234893 13018537 ~ 13028796 (+) True AMCG00005032
AMCG00005033 mRNA downstream 327573 13111217 ~ 13119024 (+) True AMCG00005033
AMCG00005035 mRNA downstream 512130 13295774 ~ 13298682 (+) True AMCG00005035
TU182286 other upstream 1000 12780580 ~ 12781170 (+) True G144940
TU181952 other upstream 1118802 11662681 ~ 11663368 (+) True G144677
TU180912 other upstream 5051170 7729389 ~ 7731000 (+) False AMCG00004870
TU180621 other upstream 7358049 5423703 ~ 5424121 (+) True G143626
TU180426 other upstream 8410081 4371709 ~ 4372089 (+) True G143471
TU183002 other downstream 2600599 15384243 ~ 15384612 (+) False AMCG00005105
TU183561 other downstream 4981613 17765257 ~ 17771525 (+) True G145932
TU184056 other downstream 6795929 19579573 ~ 19579807 (+) True G146305
TU184341 other downstream 7398710 20182354 ~ 20184643 (+) True G146519
TU184347 other downstream 7489869 20273513 ~ 20279786 (+) False AMCG00005272

Expression Profile