RNA id: TU182378


Basic Information

Item Value
RNA id TU182378
length 1360
lncRNA type inter_gene
GC content 0.30
exon number 1
gene id G145017
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 13257717 ~ 13259076 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCGAATCTTTGAATCTTATTTCTACAAATAGATTGTGCATAGCGAACGAGAAAGAACACACATTTATGAACTTAGAGGCCTAGATTGTAATTGATTGCACGCAGCACTAAACCACATCTTGAGTGTTTGCTCGTGGCAAACATGACAAAGATAagatatgaaaaaatacaacagatcAAATTTATTGACATCAATTGTAATGTCTAGTCAGACAGCTGTGAATATCAAAGGTACAAAAAAATGCTACAAATATACAACTATGGTCAATCAAATTATAACATTATTGAACACACTTAGgtatcagaaaaaataaacagacattcaGATTTGCAGGATAAAAACTGAACACTGCTTCTGCTATGAGCTGCTCATTTACTTCTTCCAACACGGATTTTGAAAAATCTAGAAAGCAGATGACCGGGCTGTGTGGTGCTGACAGCAGCTGGGATTTTCTATAACGGAGGctctttgttgttgctgtttgtaAGTAAAAAGGAATTTAAGTTATTCAACATCACAGGGGAAATTCCGGCAGCATATTGGACTAATCTGTCATTTACTCCTATACCGTGATATAGAAAAGCATGTAGAgtcttgaaaaaaataaaattaaaataactaaaaatgtCAAAGTGTTTCTTAATGTACCCTAGTTTTAACATACAAATGAATTACATAAACtgttttttataaaatgcatttttctttgatAAATGTTTTGGGAAGTTTCACACCAGATGTATTCCGGTATTGGTCCATaacattaagaaacaaacaaacaaaacacctcACAGCATAATACTTTttggttttatacatttccatttatataaaaagtattatatCAAAAAAtcctacttaaaaaaataaataagggaaaTAAATCCTTAACAATGTTCTGGACATCCCCAAGCAAAAAACCCTAATGATAAAATTCCTGACATTCAAGTGTGGCCTAAAACCAATTCAAGAGGAATCTGTTAATTGCTGTTCtctaaaacaaacagcagtcaACTCTTTTATGTTAATACCACTGCTTTTTGTATTATGGTTTAAACAGAAAagtctttaaattaataataatagtaattaaaaaataactttaaaagcaAGCTATTGAGAGCTGAgtaatttcagatatttttataattaggTAGTCCAGATAATCCTTTGTCTATTGTCTAATACAATACATCAATTTTAACAAAGATAGTTTTGGTATATGCTTGCCATTAACACATTTTGGCTTTTgtcaatacttaaaaaaaaaatatatatatatatatatatatataccttacttaaataaaacattaaaagtaaatcaCACATTTGCCTGCCAGAATAATTTGGCTATTGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU182366 lncRNA upstream 49500 13205340 ~ 13208217 (+) True G145007
TU182313 lncRNA upstream 308744 12947182 ~ 12948973 (+) True G144960
TU182289 lncRNA upstream 474073 12782170 ~ 12783644 (+) True G144942
TU182288 lncRNA upstream 474073 12782312 ~ 12783644 (+) False G144942
TU182246 lncRNA upstream 640785 12616638 ~ 12616932 (+) True G144908
TU182404 lncRNA downstream 56302 13315378 ~ 13317852 (+) True G145039
TU182456 lncRNA downstream 314166 13573242 ~ 13573460 (+) True G145067
TU182538 lncRNA downstream 927525 14186601 ~ 14188315 (+) False AMCG00005060
TU182563 lncRNA downstream 945058 14204134 ~ 14204512 (+) True G145147
TU182707 lncRNA downstream 1417633 14676709 ~ 14677597 (+) True G145251
AMCG00005033 mRNA upstream 138693 13111217 ~ 13119024 (+) True AMCG00005033
AMCG00005032 mRNA upstream 228921 13018537 ~ 13028796 (+) True AMCG00005032
AMCG00005031 mRNA upstream 302849 12950503 ~ 12954868 (+) True AMCG00005031
AMCG00005030 mRNA upstream 446780 12803285 ~ 12810937 (+) True AMCG00005030
AMCG00005028 mRNA upstream 477265 12769739 ~ 12780452 (+) True AMCG00005028
AMCG00005035 mRNA downstream 36698 13295774 ~ 13298682 (+) True AMCG00005035
AMCG00005043 mRNA downstream 79023 13338099 ~ 13363552 (+) True AMCG00005043
AMCG00005057 mRNA downstream 353530 13612606 ~ 13641696 (+) True AMCG00005057
AMCG00005058 mRNA downstream 385450 13644526 ~ 13647823 (+) True AMCG00005058
AMCG00005052 mRNA downstream 663151 13922227 ~ 13941911 (+) True AMCG00005052
TU182286 other upstream 476547 12780580 ~ 12781170 (+) True G144940
TU181952 other upstream 1594349 11662681 ~ 11663368 (+) True G144677
TU180912 other upstream 5526717 7729389 ~ 7731000 (+) False AMCG00004870
TU180621 other upstream 7833596 5423703 ~ 5424121 (+) True G143626
TU180426 other upstream 8885628 4371709 ~ 4372089 (+) True G143471
TU183002 other downstream 2125167 15384243 ~ 15384612 (+) False AMCG00005105
TU183561 other downstream 4506181 17765257 ~ 17771525 (+) True G145932
TU184056 other downstream 6320497 19579573 ~ 19579807 (+) True G146305
TU184341 other downstream 6923278 20182354 ~ 20184643 (+) True G146519
TU184347 other downstream 7014437 20273513 ~ 20279786 (+) False AMCG00005272

Expression Profile