RNA id: TU182404



Basic Information


Item Value
RNA id TU182404
length 651
lncRNA type inter_gene
GC content 0.49
exon number 3
gene id G145039
representative True

Chromosome Information


Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 13315378 ~ 13317852 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


cacacacaatacttttgatacatgtatttattgaagcaGTAATAGGCGATGCAGCACAGTTGAAAAGTCAAGAAGGAAGGGGTCCGGCGATTCCATTAGTCCAATATTTGTGTGACCCCCTCCACGTGAAGTCCGTTACCACATTGCCCTCTGGACACCGGACATGTGATTGTGGTCGGCGAGGTGGCGGAAAACAATACGACTCAGACGCCACCTGCGTTTCACCCCCCGTGGCCGTGATGTCATCACACACCTGTTCCGAATTCGCACAGGGCAGCTGTCCCGCGGCAGAGCGGCGATTTCTTTATCAGCAACCTCTGCAGCTCTTTTGGTAAGATGTTGTTTTTCCTGATAGCATTAATCCGGAGTCTCTCGTTGGCATATTCAAATGCCATCTGCCTTCTCTTCACATCTCGGACCATCCTCCAGTTAACATAGTAACCTCTGACCTGCTCCACATTCGCGGTGGCACTCCTCAAGGCTGAGTCGTTCTCCCAAACGAAGAGTGTAAAATCCCAAACCCCGAACTGACAATCCGACCCAGCATGGAGGCCGCCATGTTGAAATATTGAAGAAGacaactttatttaaaactaaagcAAATCCCACCACAGGGCAAGCAGTGGTGAACGACCTAAGGTTagttacata

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU182378 lncRNA upstream 56302 13257717 ~ 13259076 (+) True G145017
TU182366 lncRNA upstream 107161 13205340 ~ 13208217 (+) True G145007
TU182313 lncRNA upstream 366405 12947182 ~ 12948973 (+) True G144960
TU182289 lncRNA upstream 531734 12782170 ~ 12783644 (+) True G144942
TU182288 lncRNA upstream 531734 12782312 ~ 12783644 (+) False G144942
TU182456 lncRNA downstream 255390 13573242 ~ 13573460 (+) True G145067
TU182538 lncRNA downstream 868749 14186601 ~ 14188315 (+) False AMCG00005060
TU182563 lncRNA downstream 886282 14204134 ~ 14204512 (+) True G145147
TU182707 lncRNA downstream 1358857 14676709 ~ 14677597 (+) True G145251
TU182730 lncRNA downstream 1460386 14778238 ~ 14791127 (+) True G145268
AMCG00005035 mRNA upstream 16696 13295774 ~ 13298682 (+) True AMCG00005035
AMCG00005033 mRNA upstream 196354 13111217 ~ 13119024 (+) True AMCG00005033
AMCG00005032 mRNA upstream 286582 13018537 ~ 13028796 (+) True AMCG00005032
AMCG00005031 mRNA upstream 360510 12950503 ~ 12954868 (+) True AMCG00005031
AMCG00005030 mRNA upstream 504441 12803285 ~ 12810937 (+) True AMCG00005030
AMCG00005043 mRNA downstream 20247 13338099 ~ 13363552 (+) True AMCG00005043
AMCG00005057 mRNA downstream 294754 13612606 ~ 13641696 (+) True AMCG00005057
AMCG00005058 mRNA downstream 326674 13644526 ~ 13647823 (+) True AMCG00005058
AMCG00005052 mRNA downstream 604375 13922227 ~ 13941911 (+) True AMCG00005052
AMCG00005050 mRNA downstream 638850 13956702 ~ 13964422 (+) True AMCG00005050
TU182286 other upstream 534208 12780580 ~ 12781170 (+) True G144940
TU181952 other upstream 1652010 11662681 ~ 11663368 (+) True G144677
TU180912 other upstream 5584378 7729389 ~ 7731000 (+) False AMCG00004870
TU180621 other upstream 7891257 5423703 ~ 5424121 (+) True G143626
TU180426 other upstream 8943289 4371709 ~ 4372089 (+) True G143471
TU183002 other downstream 2066391 15384243 ~ 15384612 (+) False AMCG00005105
TU183561 other downstream 4447405 17765257 ~ 17771525 (+) True G145932
TU184056 other downstream 6261721 19579573 ~ 19579807 (+) True G146305
TU184341 other downstream 6864502 20182354 ~ 20184643 (+) True G146519
TU184347 other downstream 6955661 20273513 ~ 20279786 (+) False AMCG00005272

Expression Profile