RNA id: TU182413


Basic Information

Item Value
RNA id TU182413
length 538
RNA type TUCP
GC content 0.53
exon number 1
gene id G145046
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 13336209 ~ 13336746 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

aaggctggcccgtgtggtccgatccaacagacgagctactgtagctcaaattgctgaaaaagtgaatgctggttctgatagaaaggtgtcagaacacacagtgcatcgcagtttgttgcgtatggggctgcgtagccgcagaccagtcagggtgcccatgctgacccctgtccactgccgaaagcgcctacaatgagTGCGTAcagtgagcatcagaactggaccacggagcaatggaagaaggtggcctggtctgatgaatcacgagttcaaggtgttgacttggcctccaaattccccagatctcaatccaatggagcatctgtgggatgtgctggacaaacaagtccgatccatggaggccccacctcgcaacttacaggacttaaaggatctgctgctaacgtcttggtgccagataccacagcacaccttcagaggtctagtggagtccatgcctcgacgggtcagggctgttttggcagcaaaagggggacctacacaatattaggcaggtggtcataatgttatggctgat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU182393 lncRNA downstream 77348 13257922 ~ 13258861 (-) True G145031
TU182307 lncRNA downstream 520691 12812977 ~ 12815518 (-) True G144954
TU182287 lncRNA downstream 555039 12780573 ~ 12781170 (-) True G144941
TU182259 lncRNA downstream 720259 12615715 ~ 12615950 (-) True G144920
TU182222 lncRNA downstream 967741 12367423 ~ 12368468 (-) True G144893
TU182539 lncRNA upstream 724975 14061721 ~ 14062111 (-) True G145129
TU182540 lncRNA upstream 725598 14062344 ~ 14062624 (-) True G145130
TU182541 lncRNA upstream 726119 14062865 ~ 14063123 (-) True G145131
TU182553 lncRNA upstream 820834 14157580 ~ 14161976 (-) True G145138
TU182562 lncRNA upstream 843358 14180104 ~ 14183513 (-) True G145146
AMCG00005036 mRNA downstream 18357 13315390 ~ 13317852 (-) True AMCG00005036
AMCG00005039 mRNA downstream 22632 13309544 ~ 13313577 (-) True AMCG00005039
AMCG00005037 mRNA downstream 29249 13301123 ~ 13306960 (-) True AMCG00005037
AMCG00005041 mRNA downstream 40790 13263243 ~ 13295419 (-) True AMCG00005041
AMCG00005040 mRNA downstream 73341 13260215 ~ 13262868 (-) True AMCG00005040
AMCG00005042 mRNA upstream 30185 13366931 ~ 13367263 (-) True AMCG00005042
AMCG00005048 mRNA upstream 54963 13391709 ~ 13429286 (-) True AMCG00005048
AMCG00005045 mRNA upstream 244715 13581461 ~ 13601804 (-) True AMCG00005045
AMCG00005044 mRNA upstream 335997 13672743 ~ 13684709 (-) True AMCG00005044
AMCG00005049 mRNA upstream 368480 13705226 ~ 13710482 (-) True AMCG00005049
TU182156 other downstream 1179831 12154125 ~ 12156378 (-) False AMCG00005011
TU182157 other downstream 1179831 12154125 ~ 12156378 (-) True AMCG00005011
TU181238 other downstream 4429615 8872885 ~ 8906594 (-) True G144115
TU181227 other downstream 4495221 8836360 ~ 8840988 (-) False AMCG00004894
TU181155 other downstream 4959208 8353989 ~ 8377001 (-) True G144050
TU182803 other upstream 1627833 14964579 ~ 14967623 (-) False AMCG00005077
TU183873 other upstream 5677801 19014547 ~ 19015663 (-) False AMCG00005214
TU184064 other upstream 6233313 19570059 ~ 19573318 (-) True G146313
TU184128 other upstream 6421486 19758232 ~ 19761446 (-) True AMCG00005240
TU184245 other upstream 6683964 20020710 ~ 20023507 (-) False AMCG00005256

Expression Profile