RNA id: TU182553


Basic Information

Item Value
RNA id TU182553
length 215
lncRNA type inter_gene
GC content 0.53
exon number 2
gene id G145138
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 14157580 ~ 14161976 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CATTCTCGGGGGTTCGGAGGGATGGCAGCCGGAAACTCGTGTTACGATCCAGTTTGGTTTGACTCTTTGTCCTCTTGATTGAGCCTTTCAGGCGCTTGCTGAAAAAACCCTgGCACTTTGAAGGGGGAGGAGTTGGGACCATCCATAGAAGTGTTCTTCTCGGCGCTGCCAAGTCCTGATATACTTCTCCTCCTGGGTGACCTCTCGGCAGACAC

Function

GO:

id name namespace
GO:0050780 dopamine receptor binding molecular_function
GO:0001664 G protein-coupled receptor binding molecular_function
GO:0031752 D5 dopamine receptor binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU182541 lncRNA downstream 94457 14062865 ~ 14063123 (-) True G145131
TU182540 lncRNA downstream 94956 14062344 ~ 14062624 (-) True G145130
TU182539 lncRNA downstream 95469 14061721 ~ 14062111 (-) True G145129
TU182393 lncRNA downstream 898719 13257922 ~ 13258861 (-) True G145031
TU182307 lncRNA downstream 1342062 12812977 ~ 12815518 (-) True G144954
TU182562 lncRNA upstream 18128 14180104 ~ 14183513 (-) True G145146
TU182564 lncRNA upstream 42283 14204259 ~ 14204489 (-) True G145148
TU182594 lncRNA upstream 264990 14426966 ~ 14455083 (-) True G145173
TU182835 lncRNA upstream 906437 15068413 ~ 15069113 (-) True G145358
TU182876 lncRNA upstream 943242 15105218 ~ 15105450 (-) True G145387
AMCG00005054 mRNA downstream 68240 14082458 ~ 14089340 (-) True AMCG00005054
AMCG00005056 mRNA downstream 81947 14066698 ~ 14075633 (-) True AMCG00005056
AMCG00005055 mRNA downstream 95918 14050704 ~ 14061662 (-) True AMCG00005055
AMCG00005046 mRNA downstream 327234 13804007 ~ 13830346 (-) True AMCG00005046
AMCG00005047 mRNA downstream 412951 13739454 ~ 13744629 (-) True AMCG00005047
AMCG00005064 mRNA upstream 229260 14391236 ~ 14395883 (-) True AMCG00005064
AMCG00005070 mRNA upstream 318431 14480407 ~ 14483193 (-) True AMCG00005070
AMCG00005069 mRNA upstream 382846 14544822 ~ 14552948 (-) True AMCG00005069
AMCG00005071 mRNA upstream 421167 14583143 ~ 14618511 (-) True AMCG00005071
AMCG00005073 mRNA upstream 459204 14621180 ~ 14625015 (-) True AMCG00005073
TU182413 other downstream 820834 13336209 ~ 13336746 (-) True G145046
TU182156 other downstream 2001202 12154125 ~ 12156378 (-) False AMCG00005011
TU182157 other downstream 2001202 12154125 ~ 12156378 (-) True AMCG00005011
TU181238 other downstream 5250986 8872885 ~ 8906594 (-) True G144115
TU181227 other downstream 5316592 8836360 ~ 8840988 (-) False AMCG00004894
TU182803 other upstream 802603 14964579 ~ 14967623 (-) False AMCG00005077
TU183873 other upstream 4852571 19014547 ~ 19015663 (-) False AMCG00005214
TU184064 other upstream 5408083 19570059 ~ 19573318 (-) True G146313
TU184128 other upstream 5596256 19758232 ~ 19761446 (-) True AMCG00005240
TU184245 other upstream 5858734 20020710 ~ 20023507 (-) False AMCG00005256

Expression Profile