RNA id: TU182932


Basic Information

Item Value
RNA id TU182932
length 1776
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G145436
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 15255889 ~ 15257664 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tttaattgaaggcACATCATCTTAATTCTTCATATAAAAAAcgataaaatattgttatagaTAAATATCCCTTTGATCGTGTCCAGCTGTCGTCTTGAAGAGTAATCCCAATTTAAAGACAATGGAAAGGATTGTAGCGATTGGGATGGAGCTCAACAAACTATGGAAGATCTTGAAATCGAAGTGCAAGACTGAAAGGAAGACACTTCCACTTGTACCTCCATATGGTACACATTGAAAATGGTTTTGACACATCCTTCATTTACATTTGGGAATGAAGTATTTTTCAACCTGCTTCATGAATGTAGATTTTAATCACACTTATTTGTATACACATCTCTACATATAGGTAGCTACATGATGTTAAATTGCCTACATTTTTTGATATAGCCCCATGTTATTTCCAGAAGTTGGCATTAATAACATTGCACTACTTTCACAACTcatccatttaaatgttttattccttgACTAAACTCAAAAGCTTGGTGTGTTTATCAGGCTACTCAAGATTCATCTGTTGGATACTTTGTctttacagaaatattaaaatgacaaatgtttcAGTAAACCTTTTAGGGGTTACCATCTTTGCAACTCAATTCCTGTTCATTGTTGCTGGCACTTAACCAGCATCCTTCAGTGACAGTCAggtcttgttttcagaaattaaagTCAGATGTACTGGGACTCTGAATAATAAAGGTTCAGGTTAGGGAAGGAAGATAACTGGTTCACTGTGATTCAGATAATATATTGAAACCAGCAGCATCCACAGAGTGAGTTTAAACAGCTGAGCACATCAAGTCAAATTCTATAGTCCAAATCTATGTAAGACACAATAAGATATGGCTCTTCTAATCAATTATCATCCAAATTCattattgattttcatgttCTTCCGaagtatgcatttaatttcacaagatatcatacataattaaaatactgtacttaaaaaaatattcttggAGATATATGAAGTTGATCTTAAAATCAGTATAATACAGCACGCACTGGCATTGATATTCATACATTTGCTCAGAATTGCATTACTATTAATTTGAACAGATACCCACACTTTTTCACAATGTAAGTTCTTCCACAGAAACATTTCAAGGCATCTTTAAAGTGCAAATAAATCGTTACCAAGTGATTTATTGAGAGTTAATGCAAAAATCAATCTTGGGAaggataaaaatgaaaactttgacccagaAGCCAAGAGAaaactacacacctgtacatcatagcaattacatttatgattagaatacaaaatgaagCCACCACTAtagtacaggcttgtagttttcCATTAGCAGGATGGccaatgttttgatttcattcCAGCCCTCGTCTTTCCAATGTAATCCACTACAGAACATGGGATTCTCTCTGCTCTATATCTTTTTTAGAAGCAAGTAAGTTTAAATGACATTGCTCAGAATGATAGTATATTAtatgaaagcaaaaataaaggCCTGCAAGGGAAAACGCCGGTAAAGACAAAGTTGTATATTCCTGAGCTATAGTAAAGTTCATGTCCGACACCCCCACATTAATGATTTACTGCTGCTGGTATATCTCATGATGAATCACAGCCTAGCTCTTCATGGCTCTTCACAGCAGTAACGGGTAGAATCAAGTGCGAGATCCGACTCCAAAGTCCACTCCACTTATCAGGATCCATTTGATTAAACGTGGCAGGCTGGGCTGAAGTGAGGAATTTATCCTCAATGTGATCTCGGACCTTCTCTTCCACCTCACCCAGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU182930 lncRNA downstream 1001 15253513 ~ 15254888 (-) True G145434
TU182894 lncRNA downstream 106297 15145798 ~ 15149592 (-) True G145401
TU182876 lncRNA downstream 150439 15105218 ~ 15105450 (-) True G145387
TU182835 lncRNA downstream 186776 15068413 ~ 15069113 (-) True G145358
TU182594 lncRNA downstream 800806 14426966 ~ 14455083 (-) True G145173
TU182938 lncRNA upstream 3683 15261347 ~ 15266948 (-) True G145441
TU183041 lncRNA upstream 245607 15503271 ~ 15520163 (-) False AMCG00005111
TU183044 lncRNA upstream 245607 15503271 ~ 15535145 (-) False AMCG00005111
TU183125 lncRNA upstream 701187 15958851 ~ 15978855 (-) True AMCG00005114
TU183239 lncRNA upstream 1116998 16374662 ~ 16375417 (-) True G145680
AMCG00005092 mRNA downstream 6594 15242561 ~ 15249295 (-) True AMCG00005092
AMCG00005093 mRNA downstream 73045 15165446 ~ 15182844 (-) True AMCG00005093
AMCG00005088 mRNA downstream 93704 15154428 ~ 15162185 (-) True AMCG00005088
AMCG00005087 mRNA downstream 136638 15117757 ~ 15119251 (-) True AMCG00005087
AMCG00005089 mRNA downstream 154030 15093955 ~ 15101859 (-) True AMCG00005089
AMCG00005108 mRNA upstream 28039 15285703 ~ 15304821 (-) True AMCG00005108
AMCG00005109 mRNA upstream 53929 15311593 ~ 15333520 (-) True AMCG00005109
AMCG00005106 mRNA upstream 90971 15348635 ~ 15351466 (-) True AMCG00005106
AMCG00005107 mRNA upstream 102309 15359973 ~ 15369988 (-) True AMCG00005107
AMCG00005101 mRNA upstream 160911 15418575 ~ 15436970 (-) True AMCG00005101
TU182803 other downstream 288266 14964579 ~ 14967623 (-) False AMCG00005077
TU182413 other downstream 1919143 13336209 ~ 13336746 (-) True G145046
TU182156 other downstream 3099511 12154125 ~ 12156378 (-) False AMCG00005011
TU182157 other downstream 3099511 12154125 ~ 12156378 (-) True AMCG00005011
TU181238 other downstream 6349295 8872885 ~ 8906594 (-) True G144115
TU183873 other upstream 3756883 19014547 ~ 19015663 (-) False AMCG00005214
TU184064 other upstream 4312395 19570059 ~ 19573318 (-) True G146313
TU184128 other upstream 4500568 19758232 ~ 19761446 (-) True AMCG00005240
TU184245 other upstream 4763046 20020710 ~ 20023507 (-) False AMCG00005256
TU184246 other upstream 4763046 20020710 ~ 20023507 (-) False AMCG00005256

Expression Profile