RNA id: TU182938


Basic Information

Item Value
RNA id TU182938
length 2397
lncRNA type inter_gene
GC content 0.35
exon number 2
gene id G145441
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 15261347 ~ 15266948 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCATCTGTCAGGCATGTTTACCCTGGGCcaagaaaagacacaaaacgCATTCCCAGATATTAGGAGCTTGTGTCAGTACTTCATTCAAACTTTTGTATTCAGCATCCTACTCACCAGCTGCTTCCAAAGCCTCACTATTTATAACCAAAACCAACTTGAAGACTCTTTTTTCTACCGTTTTCTATATGCAAAGCTACTACAACCACACTCCAGTTTCTTCATGattgcttttaattgtttttcaaaatgatcaCATTCAATAAACagcatatatacaaaatatttcatatGAAAATTTCAGACATGGTTTAAATCTGCTTCTGGAGTAGACCTGTATGGAGAGTCACAGTCCTTCAGcagaacaaaattacatttgcaattaaaacacacatatttctCCTTAACTAGCAAGCCTTAAAATTCACCATGTCTATGCAACTCCAgctcaatgtatttattgatctgACTGCAGTTCAGGATTTCCTTTACCACAGCCAGATTAAAAATAACCTGGAGTTGCACAGCCAAGATGGAGGAACACTCAGCTCCCCCTgctgttaaaaatgtaagtcTCTTTCACTATTTTTGGTTTACAAATATTCTATAtcagattaaatgcatttgtaacaaaaatatatgtatttatatctttCTGAAAAAAGTagtagaaatatttaaatatgaaaatcatatatttacaatatttaataaggcACAAAATATTGCTGctgaataaaactgaattactttgatgaagcaaataaaaaacaggaacGATTCAACCAATTTCAAACCAAGATAGCATCCAATGGCAACTGACCACCCCGCCCTTCCTTACTAAGCTAATAATATATcaataagacaaaaaacagaagttaaTTGTAACACTCTCACCCATTTTGAAAACTGTAGTTTTGCTGTTCTATAAATTTCAGTTGTGAATTGaagcacattaaaatgttttaaactgttcaCTGTACCAAGGGCATTCTAGTGATTCAAAGTCATGGCATATGCACAGTATTTTTccactttacttttttttccccttgtaaATGACATACAGCTGGGTGTTGAAGGCAGTGGATCACCCAATATAATttcactgtataaaataataatataaattcagGAATGATTAATACAATCTTTCCTCCAGTCTTCCAAAATGTATAATCATTAGCCATAAAACAATCAGCCTCTACAGTATTGCGTTGCTGTAATGACCTCATTAATTGGTCaagagcaaagaaaataaacaaaatgtttgcaaCCCTGCTTTCTATAGCAGACAGTTCGTTAATGAAGCAATGAAAGGAAGACAGTGCAACTGATAAAGACCATAGTAGATGGTAccaaataatatacacacacacatatatatatatatataaaaaatatctttCACATTATATTACTTTCACTGTTAATCAAgaattctgaaatatattattgtaaaaatacatttcttggaAGGCTGGTGTAGACATCACAATTTTTGATGATTACACTAACATTTATGTTTATCATAAAacaacttgaaaaacaaaaatgctataaaaaaaaaagctcttgcTCTCTAGTATCAAACAATCCATCTGCCATCAAAACAACTGCTGTCCATTGCTCAAGCACCAAGAAAATCTACAATAAGACAGAAATGTGCAACAACCTCACATatgcagctttaaaaaaaaaaaagcaaacatctCCAAATAACTTCAAACATAAAATCAGGTTGCTGTCTAGTTATAACTTCTTGTTTTTGGACTTAAATGCCCCTCTCTTTACTGAGATTTAAACTGACAATATTCTCTCAAAATGTTCTACAATTTCATACTCTGACTTCCTTATTGTGAAACTTGTGGAAAAAGGACGGTCTACATATTGTCTGGATTGAAATACATCAAACAGACAATTGTCAGTGCTTGTCAGAACTTTTCTGTGTCTTCCTGAAAGGGGTTAGTTTCAAAAATCACAGCCTTGCTGTTCAATACTTCCCTCAGTATTAACAGGCAGAATTAAGTGCGAAATCCGGCTCCAAAGGCCACCCAGTTTGTCTCTGTCCATGTCTTTGAAAGATGCTGGTTCTCTCGACTTGAGGAATTTATCCTCAATGTGATCTCGGACCTTCTCTTCCACCTCACCCAGACNNNNNNNNNNNNNNNGCTCATCCTCATCCAAGACCTCCATGTCTTCTTCACTATCAAAGTTAGACTCCTCATTTTCAGGTTGATTCTGACCTCTTCTGAGCTTTTGTGGATAAGCATAGTCTAGAATGAGGAGCAAAAATCATGATATAAGCAGGCAGGGGGCTATAGGTGTCCCCTGCGAAGACCACGTCTAGAGATGGAAGCTTCCTCTCAACGTAtttctgaatgaatgaaaacatttgaa

Function

GO: NA

KEGG:

id description
ko04672 Intestinal immune network for IgA production
ko05310 Asthma
ko05320 Autoimmune thyroid disease
ko05330 Allograft rejection

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU182932 lncRNA downstream 3683 15255889 ~ 15257664 (-) True G145436
TU182930 lncRNA downstream 6459 15253513 ~ 15254888 (-) True G145434
TU182894 lncRNA downstream 111755 15145798 ~ 15149592 (-) True G145401
TU182876 lncRNA downstream 155897 15105218 ~ 15105450 (-) True G145387
TU182835 lncRNA downstream 192234 15068413 ~ 15069113 (-) True G145358
TU183041 lncRNA upstream 236323 15503271 ~ 15520163 (-) False AMCG00005111
TU183044 lncRNA upstream 236323 15503271 ~ 15535145 (-) False AMCG00005111
TU183125 lncRNA upstream 691903 15958851 ~ 15978855 (-) True AMCG00005114
TU183239 lncRNA upstream 1107714 16374662 ~ 16375417 (-) True G145680
TU183346 lncRNA upstream 1697255 16964203 ~ 16965074 (-) True G145760
AMCG00005092 mRNA downstream 12052 15242561 ~ 15249295 (-) True AMCG00005092
AMCG00005093 mRNA downstream 78503 15165446 ~ 15182844 (-) True AMCG00005093
AMCG00005088 mRNA downstream 99162 15154428 ~ 15162185 (-) True AMCG00005088
AMCG00005087 mRNA downstream 142096 15117757 ~ 15119251 (-) True AMCG00005087
AMCG00005089 mRNA downstream 159488 15093955 ~ 15101859 (-) True AMCG00005089
AMCG00005108 mRNA upstream 18755 15285703 ~ 15304821 (-) True AMCG00005108
AMCG00005109 mRNA upstream 44645 15311593 ~ 15333520 (-) True AMCG00005109
AMCG00005106 mRNA upstream 81687 15348635 ~ 15351466 (-) True AMCG00005106
AMCG00005107 mRNA upstream 93025 15359973 ~ 15369988 (-) True AMCG00005107
AMCG00005101 mRNA upstream 151627 15418575 ~ 15436970 (-) True AMCG00005101
TU182803 other downstream 293724 14964579 ~ 14967623 (-) False AMCG00005077
TU182413 other downstream 1924601 13336209 ~ 13336746 (-) True G145046
TU182156 other downstream 3104969 12154125 ~ 12156378 (-) False AMCG00005011
TU182157 other downstream 3104969 12154125 ~ 12156378 (-) True AMCG00005011
TU181238 other downstream 6354753 8872885 ~ 8906594 (-) True G144115
TU183873 other upstream 3747599 19014547 ~ 19015663 (-) False AMCG00005214
TU184064 other upstream 4303111 19570059 ~ 19573318 (-) True G146313
TU184128 other upstream 4491284 19758232 ~ 19761446 (-) True AMCG00005240
TU184245 other upstream 4753762 20020710 ~ 20023507 (-) False AMCG00005256
TU184246 other upstream 4753762 20020710 ~ 20023507 (-) False AMCG00005256

Expression Profile