RNA id: TU183239


Basic Information

Item Value
RNA id TU183239
length 380
lncRNA type inter_gene
GC content 0.48
exon number 3
gene id G145680
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 16374662 ~ 16375417 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTCATCTGTATTGCTAATCTGGAAGCGAGCTCTTCTATCTCCCCCAACAGTAATCTGCTTCCCAGTGCATCGGCCACCTTCCTTCTGCCCAGAAATGACATCGCAGTAGGTGCCAACAGGGAGGCCAGTGTTCAGAGTAACATCCATGTACCAATCATCGTTGTTGAAGACAATAAATCCTCGGTCTCCACGTCCATAAGCCACTTGGTTGCTCTCATTATCCCACCAGTTAGATAAGGGTTGGCCGTTCACAACATTACGGAAAATAACCATATTCTTGATTTGGCGCCATCTGTGCTCACAAACCCAGTCATCTCCACAAGTGCTGTCGGGATTAATGGGCACAGGCTTTGTTGTTCCATCACTGTAACTTGGCGGCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU183125 lncRNA downstream 395807 15958851 ~ 15978855 (-) True AMCG00005114
TU183044 lncRNA downstream 839517 15503271 ~ 15535145 (-) False AMCG00005111
TU183041 lncRNA downstream 854499 15503271 ~ 15520163 (-) False AMCG00005111
TU182938 lncRNA downstream 1107714 15261347 ~ 15266948 (-) True G145441
TU182932 lncRNA downstream 1116998 15255889 ~ 15257664 (-) True G145436
TU183346 lncRNA upstream 588786 16964203 ~ 16965074 (-) True G145760
TU183496 lncRNA upstream 1167746 17543163 ~ 17546332 (-) True AMCG00005158
TU183641 lncRNA upstream 1649348 18024765 ~ 18025674 (-) True G145995
TU183674 lncRNA upstream 1922430 18297847 ~ 18298103 (-) True G146022
TU183675 lncRNA upstream 1976450 18351867 ~ 18352132 (-) True G146023
AMCG00005129 mRNA downstream 57361 16312761 ~ 16317301 (-) True AMCG00005129
AMCG00005128 mRNA downstream 72209 16229357 ~ 16302453 (-) True AMCG00005128
AMCG00005125 mRNA downstream 169461 16191169 ~ 16205201 (-) True AMCG00005125
AMCG00005133 mRNA downstream 207862 16138468 ~ 16166800 (-) True AMCG00005133
AMCG00005124 mRNA downstream 317187 16046479 ~ 16057475 (-) True AMCG00005124
AMCG00005136 mRNA upstream 398250 16773667 ~ 16775958 (-) True AMCG00005136
AMCG00005140 mRNA upstream 406839 16782256 ~ 16799686 (-) True AMCG00005140
AMCG00005141 mRNA upstream 430826 16806243 ~ 16809658 (-) True AMCG00005141
AMCG00005142 mRNA upstream 437728 16813145 ~ 16814654 (-) True AMCG00005142
AMCG00005143 mRNA upstream 474385 16849802 ~ 16850062 (-) True AMCG00005143
TU182803 other downstream 1407039 14964579 ~ 14967623 (-) False AMCG00005077
TU182413 other downstream 3037916 13336209 ~ 13336746 (-) True G145046
TU182156 other downstream 4218284 12154125 ~ 12156378 (-) False AMCG00005011
TU182157 other downstream 4218284 12154125 ~ 12156378 (-) True AMCG00005011
TU181238 other downstream 7468068 8872885 ~ 8906594 (-) True G144115
TU183873 other upstream 2639130 19014547 ~ 19015663 (-) False AMCG00005214
TU184064 other upstream 3194642 19570059 ~ 19573318 (-) True G146313
TU184128 other upstream 3382815 19758232 ~ 19761446 (-) True AMCG00005240
TU184245 other upstream 3645293 20020710 ~ 20023507 (-) False AMCG00005256
TU184246 other upstream 3645293 20020710 ~ 20023507 (-) False AMCG00005256

Expression Profile