RNA id: TU183835


Basic Information

Item Value
RNA id TU183835
length 3548
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G146140
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 18893067 ~ 18896727 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCAGACAGCAGCAGTATATTCATGCTTTCTTTTAATCACTTCATAGAAAAGTATTTAAGATTCTGTTgaacacaatatacaatactATACCATACATTGTGTGAAACgtctgaaaaacattaaaatatccaCCTGGAACAACGCAGTGTTCAACTGACATACAAACCCATTGGTCATGCAGAGAGTGCTATTCTGGCTAACCATTTGGACACAATTTGGACCAAAAGTTTGAACATAGATTACAATGTTATACGGacaatttgaatttcaaaactGCTAACAAGTTTGGTCAGAAAATAGTTCACATTAGCACAATAATTACAGAAGataacattttgtaattcaTATCAATTCACATTGGTGTTCAGAGAAATTGTAACATGCCATCAATATCTCCCGAAATCTAATTAacataaagtgtttttaaatggagacagagtttgtttgtttgcttatttttcttcttgacCCTGTTTGTCTGTAACTTTATCAGCAATCTGCattcaaaatgttgtataattaaGGTTAAGGTACTACGCGTGTAACAAAGGTTTATACGAAGTCAGAATACACACGAAACTTCTTTCAGAGATAGtcagttatttgttttcaagacaGATCCATAAGTCCTTCGTGTCACCCATGGGTTTCCGTATGTCTCTTTTAGCTACTGTTCAGGGCACTCAATGTTGTgcgataattaaaaaaataaacaaaacaaaaacaccaaaataaaataaacttaaattacattttaaaaacggACTCTAACCCAGAGTCTTCTACACATCAACACCACCGTTTTGAGGCAATGCCAGtgcatataaattaaaattaatttacaattgacatttttatttacacaaactTAATAAATACACTGTTATAAACAGCAAAAGGATCACCACAAGCTCAGGTGCAATGTGGAACAAGGGATGGGACAACTAAAAAGTTATTCTCCTCCAAAGCTCAGACACATACATGTAACtgaagcaggaaaaacaaaaatatgccCGAGTATGAATGCAAGGTCAAGAACTAGACCTGCCACAGCTTATGAGAGGATTAATAGTAGAAGATATTGCAGTTTAAGTACCTGTGAGGAATCACAAGGGCAAAGCCGACctttaatcaatacaaaaaactaaatggtgAAAAATGTTTGGGAATCACATACAGTACTTGTGTGTAGTTTCCAAATTTGCCCAAAGCTTCAGCTTGTTTGGTAAAACCGCCCCCTAACTATCTCCCACTTTTTGACTAGCATCATAACatgcagtaatacaataatttttggtattgtttgtgtaaaatactgGTGTCATAATCAAATCTTGATAATGCAATGGGTTAAAGTCTCTGGACGGAAGGAACATTTTGGATTCATCGCTAGCAAAGGTTTGGTGCCACTAAAGATGGaaaagttttattatttctgcaggaagtcatttatttaattgtggaaTTAAAGGGGGAAGGTGCTTTAGGAATACATTCTCTGTGATTTCATAGTTTcgcttatttatatttttgggaaAAATCAAGCCAAGTTTATCATCTTAAAAGTACAGGACCGcgaaagtatatatttttaaaaggggaGCTAATTTCAACTAATACAAAATTGCTCAAATGTTTTTCGAATTAAAGACCAATATATACTTCTTTCCAATGTGATTTCAGTAAATGTATATGAAACTTCCTCTACTATTATCAAGATTTGAGCTGGGGTTGCTGTGGGAGCACGGAACAAtagtttaaatatgtattttcttaaatatatacagataaaaCAACGTGATTAAAATAGTGTACAAACGCTTAAACAATATCTTAATTACATGTTATGAACATCTGCTCTTTCTTTAATTTACAATGGACTGTGTGAAATACAAGCTGCTGCTACATTTAATTGGTGGGAGTCGAGTATGTGTCATAAtagaattataaattaaaaataaaactgtgcttGGGTTAAAAACTTAATATCCACCTGGAATGAGTGAAAAATGTCATGTGCATgtcgaaataaactttttgAGGGGAacaaaaattatgtattttcggGAAGTCTGTCCAAAAAGCAAGCTCAGATATTGCCCAATGTCAGAAAGAAGGAAGACTTTGTATTATCTCGTAATCTGAGAAAAAAAGATTCTGCCTTTGAGCTTTTCTTGTGTTTAGAAAAACGTTTTTACATCTATTAATAAATcgtgtttaataaataaaactttaaaaagacaaaaatcgTTAAAAAGGCACACAAAGTCCTTAGACAGATGTTACAGAAGAGTAAAGAGTCTGCTTTACAAATACCTGTATATAAGTAGTTCATTTGCTACCTCTCGACAATCcattacaaaaggaaaaacaagtaGTTCAGTACAAAACAATCTCTCAGTAGTGTCCCCCGCTCGGCGCTGGTCCAGTAAACATTCCTAGTTGGCCCCGATCCTTCGTCACCGTATCTGTTTGTAACAAAACATTGCTTGATAAGTCAGGTCCGTTTTTCTGAAGAAAATTCCTGAGAGCTCCTTCATCTCCACGCTCGCCCGCCGACCCTCGACTCTAAAAGCAAGTACGAGGAAACCCGCGTCCGCCAATGTCAGCCCCGGGCTTCAAAAGCACGATTGCAGGATTTCTCCATCACACAATCTGCCAACACAATGACCCGTTGAAGCCGGCGGCTCGTCTTATGTGTCCACTGGCGACGCGTCGTGGGTAACTATCTCTATGTGCGTGGCCTGCATCTGCCCGTCCATGTCCTGGCACTCGTCGTAGCCCAGCGGGGACTTGCCGTCGCTCATGCTGTCCTCCCCCTGGCTGTCGTCTTTCTCCGTCCCCTCGGAGTCCTCCTCCTCTAGTGTCAGCTCGAACTGGAACTTCTCGGTGGCGCCGTGGCTGTCCTTGTCCTGCTCGTAGAAGGGTGGGGACGGACTTTGGGGGATCATGCTCTGGTACCAGTTCCTATTGTCCTCTAAAGTGTCCAGGATGTCTTGCGCATCTGGGTGGACCAGGTCGGCCCATGTCTCCCAGAGAGGGTGCACGATGTAGTCGATGAACCCGACTGTGACTTCTCCACCGACGCTGTGTGCTTGTCACACATGGGGCTGATCTCCATGCCCCGCTCGCGCTCCTTGTCTCCTTGGTGGAAGAACTCATCCATGATGCGGTCCGTCCACTGCCGGTACAGCTCCAGGGACTTGGTGGGGTTGCTGAGGTCGGCGCAGTGCACCATATTGCGGAGGACCTGGCATCGACGAAGCAAAGACCAGCGTCAGATCATTCAGTGACGAGACAACATCAGAACGTCCACAACCCCCAAAACACGGCGACTACTTCAACACACACCGTCTTCTAGTTAATTATACGTTGATACTCGCGGCTATTGAACGAACGCACAGAATGGCTCTTGGGCGTACCTGTATCCTGTCCGTGTAGTTGTCGAGCAACAGCACCCCCGAACTCGTCACTTTCTTAGTCTCCACCATGGTCTTCAGGTCTGCCAGTAAGCTCATGTGCTTGGACATGTCCGTCGCCAACACCTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU183799 lncRNA upstream 71425 18820357 ~ 18821642 (+) False AMCG00005199
TU183759 lncRNA upstream 128769 18764043 ~ 18764298 (+) True G146091
TU183758 lncRNA upstream 135196 18757667 ~ 18757871 (+) True G146090
TU183756 lncRNA upstream 136472 18756075 ~ 18756595 (+) True G146088
TU183698 lncRNA upstream 350227 18541256 ~ 18542840 (+) True G146043
TU183880 lncRNA downstream 151821 19048548 ~ 19053126 (+) True G146172
TU183905 lncRNA downstream 187292 19084019 ~ 19084317 (+) True G146188
TU183921 lncRNA downstream 220804 19117531 ~ 19195204 (+) True G146202
TU183944 lncRNA downstream 321704 19218431 ~ 19219345 (+) True G146222
TU183989 lncRNA downstream 567269 19463996 ~ 19464975 (+) True G146256
AMCG00005197 mRNA upstream 66575 18824891 ~ 18826492 (+) True AMCG00005197
AMCG00005199 mRNA upstream 71644 18815029 ~ 18821423 (+) True AMCG00005199
AMCG00005198 mRNA upstream 86577 18793732 ~ 18806490 (+) True AMCG00005198
AMCG00005203 mRNA upstream 139477 18741992 ~ 18753590 (+) True AMCG00005203
AMCG00005204 mRNA upstream 159139 18728705 ~ 18733928 (+) True AMCG00005204
AMCG00005217 mRNA downstream 195500 19092227 ~ 19115694 (+) True AMCG00005217
AMCG00005232 mRNA downstream 578558 19475285 ~ 19530453 (+) True AMCG00005232
AMCG00005231 mRNA downstream 655736 19552463 ~ 19564086 (+) True AMCG00005231
AMCG00005239 mRNA downstream 804736 19701463 ~ 19704317 (+) True AMCG00005239
AMCG00005237 mRNA downstream 812609 19709336 ~ 19711528 (+) True AMCG00005237
TU183561 other upstream 1121542 17765257 ~ 17771525 (+) True G145932
TU183002 other upstream 3508455 15384243 ~ 15384612 (+) False AMCG00005105
TU182286 other upstream 6111897 12780580 ~ 12781170 (+) True G144940
TU181952 other upstream 7229699 11662681 ~ 11663368 (+) True G144677
TU180912 other upstream 11162067 7729389 ~ 7731000 (+) False AMCG00004870
TU184056 other downstream 682846 19579573 ~ 19579807 (+) True G146305
TU184341 other downstream 1285627 20182354 ~ 20184643 (+) True G146519
TU184347 other downstream 1376786 20273513 ~ 20279786 (+) False AMCG00005272
TU184405 other downstream 1624922 20521649 ~ 20524819 (+) True G146575
TU184436 other downstream 1765199 20661926 ~ 20670169 (+) True G146596

Expression Profile