RNA id: TU183880


Basic Information

Item Value
RNA id TU183880
length 4453
lncRNA type inter_gene
GC content 0.35
exon number 3
gene id G146172
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 19048548 ~ 19053126 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTCacctttttattgatttgtgcaTTGCACCTCATTAATATGTACAGGTTGGAATGGGTAACGGAACCAACAAATCACAGGAACAGACTCCACGTTTCAGTAATACTTTTACAGCAGACAAGCAAACACATAATTGTATCAAAAACTCACCACCTTCTCacaataattgttttgaatagTACACATCCAATATGTCAAGGTTAGCTTGAACATCGCTGTACATTTCAAAAGACACACATGTTCAGTAAACAGGGGGGGTGTACTTTCTAAAACAAGTCCAGTCACTGTGACTTTCTGTGCACTGTATAGATTACGACAGGTTACTTGATAGGTCTATGTATACTCTTCACTTAATCATAAATGCTGCAGTAGTACTATCCCTTCTCTGTTtggcatttattaaacattattcactaatgaaattaaatagtcTGTGAATAACAGGAGGAATCCACTATTATCCATTGACAAgagttacattttacatattataaGACAAATACCTTTTCCTAACATTGTACCATTGTGCCAACACACCAACAGGCATTTGAAGTACCTAATGTGATAACGTTTAATATTgtacatgcaaaatatattttaataactgtcTCTTAGTGGATTTCGCTGTTATTCctgaactatttatttacatttagtaAGTAAAAATGCTTAATTGTGTTCTCCTGTGGATGCACTTAATCATAGAAGGGAATTTAGCTAAATGTATTTGACTATATTTCCAAAAGACTTCTGCATACTTATACTGATGCTATAATTATTATAAGCTCAGGCCCAGGTACATACCGACATTTTTCTCTCTTACAACATAGGTGTTTTCATAAAAGtgccaaaacaaacattatcaTATTCACACAAAATAAGCGTTGGGGTTTATACAGTACATGTATTGATATTTCTCATGTCAGTGTCTCTTTACAGCACACAGCTCAACAGTTCTGAAAGATATTAGAGGCTTCACTGGCCgaatttccttttcaaatgactattcaagaaaacaaatggaatatCACAATTTTTTAACAATAGAAACCAGATTTCATAGTTTCATTAAAgcaataatgtatattatttttaattaaactaaaatagcCTTCATGGAATAACATGTCTccataaataaagatataaagtTATCATctattaaaggaaaatatatcgctaaataaaatatttgtagcatcttaaaataaattatattttgtgacCATTCATTGTTtcagcaaatatttaaaataggaaaaaaatgtatgggaaaaacaaacacacagaaaacacacgtGCTTTGACAATTTCACCGTGACAGTGTTGACCAGATTGTTTAGGACAGAAATATTTCTCCACAAGGTGTAATACTAGGCTGGACTAATAGTTCAGTGCTACCTGTAAAATTGTTTCCATGTACCagggatttattttcaaaaatgtaataaaaagacTGCCTTTAAGGAATGTCCTTGAGAGACTTCTGTAAACATAACAAGTTCACGTCAGTATATTACAATGAACTCCAGTCATCCGCTTTATTGAATGGAAGTTTCTCAATTTCAATAGAGAAGAGAATTACGCTTCATTATAGCGTAAATGTGACTAATCTGCCAGAAGtagaaacaaaagacaaaaaacacttttcacaAATGTTTCATAAGGCTAAGAgcttaatgaaataaatagaatgaagtttaaaacacaagagctgcagttattgattaaaataaataatacattttattaaataaataaataaataaatagttaattaaCTCGGAATTCCATTTTATGAAGAAACAGAGCCTTGCCAGTTATCTCAGCTGAATAACAGTACTTTCATTCAACTGTTTTAGACTTTTCAACagttaaactaattaaattagaaagatttaatttgttttattcgtGGGTTGAATCTTTGTTAATAGAAGACAGTCAGCTGTTCTAACAAATCAATTGCTATTCCAGCCACATCAGTTTGGTGCATTTCATTACTAtgagaattatttaatttgtttaaattgggttgacaagattatatatatattatatatatatatatatatatatatatccttgcCACATCTGATCCTAACTTTACTCCTAAAGTAGTTGCAGGAATGGTTACAATTGATTCTTGTAATGATTTTCTTGCTTATTTGTTAGTGGTGGGTTTTTATCTTCTTCCGTGCTTGAAATTCTAGTCTAATATGTTGTTTAGATAGATATTagttcatttttcattaatgtCTGCTATGCCTGCCTTCAATCAAAATGTTACATCAGCCACCAATCACAaatagtgtttttgtttcctagAGGTCTTTACTTCTAACCAGTTGACATCCTCAGTCAAATATGGGATCAgctgatattttgttttaacaagcATAGACCAACTATAATTCTGACTTACCCATGAATCATTAATTACAAACCTGTCAACttagtggcttctgacaataaatcaCACCGCGATAGGCTACATGTTTCTATTGGACAGTTTGAGATGAGgaaaaactttttatttggtCATTTTGTAACTGTATTCCAGCAGAAATATTTATGTTGAGCCATCACAAAATGTCTAAACCAGCTTGGCACTTTAATAACCCAGAATTTGGGACCAAGAGCAGGTTAAGCACTTCTCTGGATGCAGTCTCTTGAAACCGGCTTCAGGAAGTAATTTTAGGGTAATTGTACGACTCCATGAAgactgcattcattcattcgcTTCATGCACTCAAATACAAAGAGactgttaaaaaagaaaagaaaaataacaactaaaatctgaattaaaaacaaactccctCCGTTTACAACAGCTTAGGTTACCTCTACTTCTGCAGGGCAAAAACACACCTGAAGGAAATATTTTGGTCAATTTACTCAATTCAATGTGATGCATTTGTAATCGCTGGAATTGTATTTAAAGCTATAAACATTGATAAACTCATCTTTTCATGTAAACAGCTTCTCATCGATACAGTACACCTCAACCTGCGGTGATTACAGATCATTaataagcaaaagaaaatacagtttcgtaataaaataatatagaggcttttctaaaaagaaagcaaacatttcCAGGGTGGTCCACTATGGATGAGACATCTGCAGACAAGGTCACCTGACAGAAGCCTTGGAAAATCTCCCAATCTTGAATTGTAGAAATAGTGGGCGTAGGATCTATGATACACTGTTCGGTATGCCTAAATTATCTTCATGTCCCATCATGTGTAGAGCCTAGAGGTTCATTTCTAATGCTCGTCAGCAGGCAGATGTAAAAGCCAGGTACACAAATTTGATGATTCAGATGCTGTATATTATTCTCCACACAGGGAGACGGGAAGGATGCCAAAGGTCTTCAAAGATAGGAGCGTGTAGGAATGGTTACTCACCGTTTTACTGTTTTGAAtgccaatgaaaaaacaaaatgacatggGAATATTCTCCATTCCCCACAGGTCTCAAACTGACGCTGAtttatttcatttcacttttccaCTACGCAGTTTATAACCTCCGTGTGGGGGTTGTGTTCGCCCATCGCTAAGTGTGTATTTATCATCATCTGCTCTTGGCGGCCGCATGCTTTCCGTGTTAAATCACCACGGCCAGCTGCCTTCCAGAGTGAGAAAAATTAAATCTATCATTTgatctttcatttaattatcgCTGATGCAGGATTTCCTTGGGAGTAATGTACCGCACATAATACAAGCTGAAGTCAGAGGGGACTCTGTGCAAATGTGAAACTAATTTGTCTCTGCATGCAGCTGTCgaaagtgtgttttattttattgtcctgCCGAGTTCATAACCATTAGAGTGAATACCTGTAATGGAGTATAGCTCACTCCTTCAAGCCCCTATTCAACTCTCTTTATCATATTGAAAACCTGTTTAAAGTTCAGCCCAAAGCACcttatttcaaacattaaaacataataagtGAATGGTATTGTGGACAAAGATCTTTCACTGACCATCAGTGAATGTCTCATCGATGCTGGACCAccctgttttccttttttgtgtgttcaaGTTTCTCTCAAAAGTGTTCTGTACAAGACAACCttaacattttccatttgacaATGTGCACCAGTTGAATGGGTGAGTCTGAGGTTTACATCTAAACAGTTAAATCTGTATACCAACGTCGCTATGGAAAGGAACCCACGTGACAAGTGACgataataagaattaaaaaaataagaggaaTCACAGCACAGATCTGAAGGGAGAGCAAATCATCGGGAGGGCTTGGACTTTGTTGCATTTCAATACAGTGGCTTTTGTCCTTGGCTATCAAATTCTGACCAGGCATCATTCAATTCCATAAAAATCATCTTGGCATATTGTTCATACGGCTGCCCGGTAGCCTTCAAAAAAGGAAGAGgagatattttattacatacatatatctttT

Function

GO:

id name namespace
GO:0031290 retinal ganglion cell axon guidance biological_process
GO:0015672 monovalent inorganic cation transport biological_process
GO:0006814 sodium ion transport biological_process

KEGG:

id description
ko04911 Insulin secretion

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU183835 lncRNA upstream 151821 18893067 ~ 18896727 (+) True G146140
TU183799 lncRNA upstream 226906 18820357 ~ 18821642 (+) False AMCG00005199
TU183759 lncRNA upstream 284250 18764043 ~ 18764298 (+) True G146091
TU183758 lncRNA upstream 290677 18757667 ~ 18757871 (+) True G146090
TU183756 lncRNA upstream 291953 18756075 ~ 18756595 (+) True G146088
TU183905 lncRNA downstream 30893 19084019 ~ 19084317 (+) True G146188
TU183921 lncRNA downstream 64405 19117531 ~ 19195204 (+) True G146202
TU183944 lncRNA downstream 165305 19218431 ~ 19219345 (+) True G146222
TU183989 lncRNA downstream 410870 19463996 ~ 19464975 (+) True G146256
TU183999 lncRNA downstream 422013 19475139 ~ 19480598 (+) False AMCG00005232
AMCG00005197 mRNA upstream 222056 18824891 ~ 18826492 (+) True AMCG00005197
AMCG00005199 mRNA upstream 227125 18815029 ~ 18821423 (+) True AMCG00005199
AMCG00005198 mRNA upstream 242058 18793732 ~ 18806490 (+) True AMCG00005198
AMCG00005203 mRNA upstream 294958 18741992 ~ 18753590 (+) True AMCG00005203
AMCG00005204 mRNA upstream 314620 18728705 ~ 18733928 (+) True AMCG00005204
AMCG00005217 mRNA downstream 39101 19092227 ~ 19115694 (+) True AMCG00005217
AMCG00005232 mRNA downstream 422159 19475285 ~ 19530453 (+) True AMCG00005232
AMCG00005231 mRNA downstream 499337 19552463 ~ 19564086 (+) True AMCG00005231
AMCG00005239 mRNA downstream 648337 19701463 ~ 19704317 (+) True AMCG00005239
AMCG00005237 mRNA downstream 656210 19709336 ~ 19711528 (+) True AMCG00005237
TU183561 other upstream 1277023 17765257 ~ 17771525 (+) True G145932
TU183002 other upstream 3663936 15384243 ~ 15384612 (+) False AMCG00005105
TU182286 other upstream 6267378 12780580 ~ 12781170 (+) True G144940
TU181952 other upstream 7385180 11662681 ~ 11663368 (+) True G144677
TU180912 other upstream 11317548 7729389 ~ 7731000 (+) False AMCG00004870
TU184056 other downstream 526447 19579573 ~ 19579807 (+) True G146305
TU184341 other downstream 1129228 20182354 ~ 20184643 (+) True G146519
TU184347 other downstream 1220387 20273513 ~ 20279786 (+) False AMCG00005272
TU184405 other downstream 1468523 20521649 ~ 20524819 (+) True G146575
TU184436 other downstream 1608800 20661926 ~ 20670169 (+) True G146596

Expression Profile