RNA id: TU183921


Basic Information

Item Value
RNA id TU183921
length 2674
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G146202
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 19117531 ~ 19195204 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ACACCGTGAATTTTATTATgggaaggaagaaaaagcagGAATTCAGCCCAAGTCAGATCTCCGTCAAGACTGTGGTTTATTCCTTCTGAACAAGTTCTCTACAAAAGAAACCACGATGCGTCAAAAGATGCATCAGAGATAGACCGGAGCAggttggaataaaaacaattaaaacagaagtATGTGTTGCTGGCTGGCGAGTTTCAgtcaaacatttattattttggaatGTAAAAGACAATTCCTTCAGTTCAAAAATCATTTCAGTGGAGTGAGAAAGGGAACAAAAGATGAGTGGTGaaaaaagtacataaatacagagaattaaaataaattaaattgtgttcaaattaaaagtgTAATAATATCCACTATGGAAAACATTCTTCAATTTTATATTACAGCGGTAAATCGTCTGCATGCTGAAGTCCAATTGCGGCTAAAAAATAGCTTATTCACAGTAAAGCAATATCCACAGatttggaaatataaaatattgcaaaaatCTTAAATCTCAGGTCAGAAAAATCTAGACAAATACggtcaaacaaaaacatcttgcaaaaaaaaaaaaaatcagttttcagTCAAAATACAATTAGCGTAAATAGAATTCTAGAGACATTTATGGTCTTGTCCCAAGCAAAATGGGTTTGAACATCGCAAATTTCGTAGGAGGAAATACAGACATCTACAGGATTGCTCATTCAGTGACATCGGAGGGCGCCTAGGCTgggttttaaatatatctccCATAATGCACCTGGTCAACAACAAGCAGAAACACATGAATCGAAACACGACGCATGATAAAACCCTGCCGTGAGCCCACTCTCGTACGCACTAGGTCAGCGTTAAAATCGTCTATACCAACAAAAAAGCAAGCCTCGTCACAAAACAGAGACCCGATCCGAGATGGCGACGAAATATCAGATACCGAAGAGGTTCCGGATCTGAACGCTTTGTGACGAGGGAGATTACTTGGAGGTTAATTACCACCTCGATCGGGACACGGATGCCGATTTTGATGCAGATGTCTGTAAAACTAAAAGGACTAAAATCACagcaaaacaatatgaaaatttaaaaactaggatacaaaaaatttaaaataaatgaattgtgGTGGCTCAGTTTGGTTCGCCTTATATAGTAACACAACAAGACGGTAAAACAAGACACTGTAAGAGAAAGCTAGACACTCACAAACTGACCAGTCCGAAAAACAACCCCACGCGTCAGATCTACCTGCGATAATCGAAACTAATGGACACCCAAGATGGTGATTTAGTGCTCAAGATAAGGTTAGTGAGGGTTTTCGCCCCAAAATGGCTTTATTGGCTTCAATACATCCGCTTTAAATTCCTGAATTCCTGCAAGACACCAGTctgcattagaaaaaaaatcttattacAATAGAACTCGtcaaaaattacatttgcattttatttacagcttCCACTACAGATATGCAGGGCTGCAATTATTGCCTTTAAGGcttgaagaaaaacagaaaaaagataCTTGGACAAAGGCATTGTAAGCGATTAGCAACACTTATATTGAacgaataaaaacaaaaatcttgcCCATTTCATAACATCAGGTTGCTGAATTATTTGTTAGTGGTTTTATTCCGAagcttattaaaacaaaacgcTCTCCAGTGCGATCCTACGGGCAGATGTGGATCTCGCGTGGCCGATCCCTCACGCGACTGGTggatttatattataaaaaaaaataaaataaaaataaaaaaaatcattcgCTTCATCCCTGGAGAGTGCGAGTgtcgggagagagagaaaattgaaTCGCTGCTAAGCTTTCATACCCTGAATACGAGCCGTGATTAATATTGCCTTGGTGTCAAAAACAACACGGGCGGAGTGATGAGCAAGCACAACATCTTCCACCACACACATCATTCCCaagaaagaacataaaaacGTTCCGAATAACCCCCCAGAACGGTAGTGCAAGACGACTCCTCCCTCACTGGCCTCGCCAGACTATTTTGACACACGCTTGTGCGTCCCCACACTCCAAAAAGCGCACGAACACAAGCCCGACGCGGTACAGAACTCGAACCCGGCCGCCAACACCGAGGGCGACTGTAAGAAGAACAGGAGACAAGATTCTAGAACTACAGCAAAAGTCATCCGGGGCACCGAAACGTGCCGCCAAACATTATTGCATTGATTGTTTGACACGGCCGTCCAGCCCGAGGAGGGTCTTCCCGTCCTTGGGCGGAGAAAAGCTTTGTTCCCGGAATCGGGGCGACCGTCCCACTGACTCCGGTCAATCATATCGAGCAGCAGAGTACTGTTCACATGGCTAATCGACtcctatatttaaaaagtgaccGCAAAACTAAAGTTCGCTAAAATTCCTCCAAAGTAAAAATCGGTTTCACCAAAAACGCTAAGGATGttctttacattgttttttaaagttaaaactaGAAACTGAACCAGGGTTGAGTTCATTCTCCTCTTCAATCCAGCATCTCAATAAAAGCCCCTTTTACAAAACAGCCGACGATACGTAACCCGCAGTAAGACCTGCGtgaatgcaaatacaaaagtagttatacatttttataatgtacagttttttttttttattcctctttttttttttttttttttttttttttttttttttttta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU183905 lncRNA upstream 33214 19084019 ~ 19084317 (+) True G146188
TU183880 lncRNA upstream 64405 19048548 ~ 19053126 (+) True G146172
TU183835 lncRNA upstream 220804 18893067 ~ 18896727 (+) True G146140
TU183799 lncRNA upstream 295889 18820357 ~ 18821642 (+) False AMCG00005199
TU183759 lncRNA upstream 353233 18764043 ~ 18764298 (+) True G146091
TU183944 lncRNA downstream 23227 19218431 ~ 19219345 (+) True G146222
TU183989 lncRNA downstream 268792 19463996 ~ 19464975 (+) True G146256
TU183999 lncRNA downstream 279935 19475139 ~ 19480598 (+) False AMCG00005232
TU184054 lncRNA downstream 374269 19569473 ~ 19570003 (+) True G146303
TU184055 lncRNA downstream 378119 19573323 ~ 19575574 (+) True G146304
AMCG00005217 mRNA upstream 1837 19092227 ~ 19115694 (+) True AMCG00005217
AMCG00005197 mRNA upstream 291039 18824891 ~ 18826492 (+) True AMCG00005197
AMCG00005199 mRNA upstream 296108 18815029 ~ 18821423 (+) True AMCG00005199
AMCG00005198 mRNA upstream 311041 18793732 ~ 18806490 (+) True AMCG00005198
AMCG00005203 mRNA upstream 363941 18741992 ~ 18753590 (+) True AMCG00005203
AMCG00005232 mRNA downstream 280081 19475285 ~ 19530453 (+) True AMCG00005232
AMCG00005231 mRNA downstream 357259 19552463 ~ 19564086 (+) True AMCG00005231
AMCG00005239 mRNA downstream 506259 19701463 ~ 19704317 (+) True AMCG00005239
AMCG00005237 mRNA downstream 514132 19709336 ~ 19711528 (+) True AMCG00005237
AMCG00005238 mRNA downstream 547149 19742353 ~ 19755790 (+) True AMCG00005238
TU183561 other upstream 1346006 17765257 ~ 17771525 (+) True G145932
TU183002 other upstream 3732919 15384243 ~ 15384612 (+) False AMCG00005105
TU182286 other upstream 6336361 12780580 ~ 12781170 (+) True G144940
TU181952 other upstream 7454163 11662681 ~ 11663368 (+) True G144677
TU180912 other upstream 11386531 7729389 ~ 7731000 (+) False AMCG00004870
TU184056 other downstream 384369 19579573 ~ 19579807 (+) True G146305
TU184341 other downstream 987150 20182354 ~ 20184643 (+) True G146519
TU184347 other downstream 1078309 20273513 ~ 20279786 (+) False AMCG00005272
TU184405 other downstream 1326445 20521649 ~ 20524819 (+) True G146575
TU184436 other downstream 1466722 20661926 ~ 20670169 (+) True G146596

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00063981 True 6831 mRNA 0.44 15 NC_007117.7 31430791 ~ 31576397 (-)