RNA id: TU183950


Basic Information

Item Value
RNA id TU183950
length 1335
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G146227
representative False

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 19218391 ~ 19219758 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ctgtaaataaataaatgaagccGGAATGACATGCaaagatatatatacagaaatgttttataatgagaaaagaaaagagaagtcGCTTCTCGAACACCACCGATGCCTTTAACCGTCTCGTGCCGAGAGAGAGCAGCTCCCTTGCGAATCTGTCCTCCGAGTTGACCGTCGCTTTATTAGGTTATTGCGATTACAGGTGAGGTGTTTTAtggctggtgctggtgctggagtTGATCAATTTGGCTGCACTTCCTGTTACTTTCTAACTGTTACTGTCttggtttcctgtttttctgaTTGTCTTAATCATTATTCTACGTTCTTATTGACTATTCCAGTAAAATGTTTTCTGGAAGGACTGACCGATGATTGACACAGGAGTTCACTGCGACATAAACTCACAAGGGCTTTATAGAAATGGTTTTGCAATcagaaatcaatcaaacaattatgttttaactCTAATATCTGGTTAATGTGATGTATCCACTAgccatccctctctcctcctttaGTTTCTCCCTCTGCTATGCAACATGTAGCCTTAATAAATGCAGTCCTCACGTATTTGCTGTTTATGAAGAAGTGGGtctaataaatgtgtgtattcaaTGTGATCCATTTGAATGTTGTAACCTATAATTTaatatcttttttatttgatttgtgtgCAAGGACTGGACTGAAACGCATTAGACAGAATACAGGGAGTTTGCTAAAGCGTTGAATCCTGTTTCGATTGAATCCTTTAGActtatttttaaaggatttatATAAGCAgctatatttcattttttgaatatatttgttgCTGTGCAACTGTTAAATACAAAGATCCAAAATCCACTCGTATAGAAGACAATCATTTTTACGACGGTTCATCAGGGGACAGAGCTAAATTGAagcaaagcagagaaaaaaCCTGACAACCCAATCAAGCATCTCTgggattttatatattgtattatcatgatcaatatcattattatcattattattactagcatttttattattcatcaaCTTCATAATAAATCCCAATCTGTGAAGTTTGTGAGACACCGTTTTGCCTACCTAGGTACCTGCAGTTTTATACAGGTATCCTTCGCTATTATAGAGATGTATTCCAGTTAAAACCACTTTAACAAAAGACTGTGAATCCAGTGGGAGAAGTTTTGTGCGTTTAGGACAGTCTTTTGTAGTATTTTTGTAGAGTTCAGTCCGTCGGATTACAAATACACAAGGTTTACAACTTCCAGATTGTATTGAACGAGCGGCCTTCTTTCTTTCGTGTTTGTGAGAAGATTTTTGCACAGATGTTTTGtatggcaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU183906 lncRNA downstream 132383 19083995 ~ 19086041 (-) True G146189
TU183766 lncRNA downstream 464891 18741884 ~ 18753533 (-) False AMCG00005207
TU183675 lncRNA downstream 866292 18351867 ~ 18352132 (-) True G146023
TU183674 lncRNA downstream 920321 18297847 ~ 18298103 (-) True G146022
TU183641 lncRNA downstream 1192750 18024765 ~ 18025674 (-) True G145995
TU183990 lncRNA upstream 244249 19464007 ~ 19464975 (-) True G146257
TU184066 lncRNA upstream 391008 19610766 ~ 19611005 (-) True G146315
TU184074 lncRNA upstream 484246 19704004 ~ 19732117 (-) True G146322
TU184123 lncRNA upstream 534438 19754196 ~ 19754744 (-) True G146347
TU184124 lncRNA upstream 536489 19756247 ~ 19757237 (-) True G146348
AMCG00005225 mRNA downstream 2285 19207738 ~ 19216139 (-) True AMCG00005225
AMCG00005224 mRNA downstream 17012 19151990 ~ 19201412 (-) True AMCG00005224
AMCG00005218 mRNA downstream 71597 19120164 ~ 19146827 (-) True AMCG00005218
AMCG00005213 mRNA downstream 137821 19072155 ~ 19080603 (-) True AMCG00005213
AMCG00005215 mRNA downstream 151317 19052978 ~ 19067107 (-) True AMCG00005215
AMCG00005223 mRNA upstream 68 19219826 ~ 19226999 (-) True AMCG00005223
AMCG00005226 mRNA upstream 23941 19243699 ~ 19244617 (-) True AMCG00005226
AMCG00005219 mRNA upstream 96997 19316755 ~ 19330003 (-) True AMCG00005219
AMCG00005221 mRNA upstream 112483 19332241 ~ 19340709 (-) True AMCG00005221
AMCG00005220 mRNA upstream 129814 19349572 ~ 19359668 (-) True AMCG00005220
TU183873 other downstream 202761 19014547 ~ 19015663 (-) False AMCG00005214
TU182803 other downstream 4250801 14964579 ~ 14967623 (-) False AMCG00005077
TU182413 other downstream 5881678 13336209 ~ 13336746 (-) True G145046
TU182156 other downstream 7062046 12154125 ~ 12156378 (-) False AMCG00005011
TU184064 other upstream 350301 19570059 ~ 19573318 (-) True G146313
TU184128 other upstream 538474 19758232 ~ 19761446 (-) True AMCG00005240
TU184245 other upstream 800952 20020710 ~ 20023507 (-) False AMCG00005256
TU184246 other upstream 800952 20020710 ~ 20023507 (-) False AMCG00005256
TU184357 other upstream 1054633 20274391 ~ 20279746 (-) True G146532

Expression Profile