RNA id: TU184058


Basic Information

Item Value
RNA id TU184058
length 345
lncRNA type inter_gene
GC content 0.51
exon number 1
gene id G146307
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 19592750 ~ 19593094 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCCGATTCTGCATTCAAATATCGTGTCTCAATACCCGTCTCGGCCCAACAAGGACTTCCCAACCCCAACCACCAAAGCCCGTACATCccgggaaaaaaaaagcaaaccctGACCGCTGTGTAAACGTCGTATACAAAGCAACTTAATTAATTTTGGGGTGAAAGGAGGAACTGCCTCGGCGTTCTCCGGGCAGCACTGCGGACATCTCGCATGCCTTACCCACGGCCTTGCAGGTCTTGGTTACCGGGTCCATCTCGTAGCCTTCATAGCATTCACACTTGTAGTCGCctttgtaattgatgcagaTCTGGCTGCAGGCGTCCGGATTCTCACATTCGTCTATGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU184057 lncRNA upstream 7094 19585448 ~ 19585656 (+) True G146306
TU184055 lncRNA upstream 17176 19573323 ~ 19575574 (+) True G146304
TU184054 lncRNA upstream 22747 19569473 ~ 19570003 (+) True G146303
TU183999 lncRNA upstream 112152 19475139 ~ 19480598 (+) False AMCG00005232
TU183989 lncRNA upstream 127775 19463996 ~ 19464975 (+) True G146256
TU184126 lncRNA downstream 167058 19760152 ~ 19760791 (+) True G146350
TU184234 lncRNA downstream 414322 20007416 ~ 20011135 (+) True G146442
TU184248 lncRNA downstream 431079 20024173 ~ 20026061 (+) True G146450
TU184288 lncRNA downstream 515008 20108102 ~ 20109541 (+) True G146486
TU184340 lncRNA downstream 589260 20182354 ~ 20184643 (+) False G146519
AMCG00005231 mRNA upstream 28664 19552463 ~ 19564086 (+) True AMCG00005231
AMCG00005232 mRNA upstream 62297 19475285 ~ 19530453 (+) True AMCG00005232
AMCG00005217 mRNA upstream 477056 19092227 ~ 19115694 (+) True AMCG00005217
AMCG00005197 mRNA upstream 766258 18824891 ~ 18826492 (+) True AMCG00005197
AMCG00005199 mRNA upstream 771327 18815029 ~ 18821423 (+) True AMCG00005199
AMCG00005239 mRNA downstream 108369 19701463 ~ 19704317 (+) True AMCG00005239
AMCG00005237 mRNA downstream 116242 19709336 ~ 19711528 (+) True AMCG00005237
AMCG00005238 mRNA downstream 149259 19742353 ~ 19755790 (+) True AMCG00005238
AMCG00005235 mRNA downstream 169074 19762168 ~ 19771973 (+) True AMCG00005235
AMCG00005236 mRNA downstream 182385 19775479 ~ 19783604 (+) True AMCG00005236
TU184056 other upstream 12943 19579573 ~ 19579807 (+) True G146305
TU183561 other upstream 1821225 17765257 ~ 17771525 (+) True G145932
TU183002 other upstream 4208138 15384243 ~ 15384612 (+) False AMCG00005105
TU182286 other upstream 6811580 12780580 ~ 12781170 (+) True G144940
TU181952 other upstream 7929382 11662681 ~ 11663368 (+) True G144677
TU184341 other downstream 589260 20182354 ~ 20184643 (+) True G146519
TU184347 other downstream 680419 20273513 ~ 20279786 (+) False AMCG00005272
TU184405 other downstream 928555 20521649 ~ 20524819 (+) True G146575
TU184436 other downstream 1068832 20661926 ~ 20670169 (+) True G146596
TU184446 other downstream 1106392 20699486 ~ 20702404 (+) True AMCG00005286

Expression Profile