RNA id: TU184074


Basic Information

Item Value
RNA id TU184074
length 604
lncRNA type sense_over
GC content 0.47
exon number 2
gene id G146322
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 19704004 ~ 19732117 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGTAAGTAAGGACCCGGCGCACAGTAGAGGTGGCGTTCGTAGTGCCTGACAAAAATTTCGATCGATTTTGCGTTTGCCCGGTTTTATAAACTTTTAATTCAATATTGCGTTTATTATGTCACggaagacatttgtttttatggtgGAGGAGGTTTTGCCAGAGCTGGAAAGGGAGACAGGCCGAGTCCAGCGCTGGCCTTAGTGACTCTGGCGAGCAGGAGTTGTTTTTGGAAGGCCTGGATCCTGTTGTGGATTTGACCTGTCGCGAGCCCACAGCATGCAAGAGACCGTTACACGTTTTCCTGAGAGGACGTCTCGGTTCCCACTGAGATCACGTCGGAATCGGGGCTTCCTTGTGGAGCTgcgagaggagagagaggtcaGGCGTGAGGGTCGGGTCATACGAAGCATAAGGATTTTAAACCTGTAACATAATGAAGTCtgtgaaagaaagcaaaaataaatctcaagaAGGCTGAGCAATGAAAACTGACTTCTGGTGCCCTCTTCTGGTGATGTCATGTCATTTTCACCACCTAAAGTCTGTTTAGCATCATTACACATACATCAGCAccattaataatacacataatccACTTCTCAC

Function

GO:

id name namespace
GO:0030145 manganese ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU184066 lncRNA downstream 92999 19610766 ~ 19611005 (-) True G146315
TU183990 lncRNA downstream 239029 19464007 ~ 19464975 (-) True G146257
TU183949 lncRNA downstream 484246 19218391 ~ 19219758 (-) True G146227
TU183950 lncRNA downstream 484246 19218424 ~ 19219758 (-) False G146227
TU183906 lncRNA downstream 617963 19083995 ~ 19086041 (-) True G146189
TU184123 lncRNA upstream 22079 19754196 ~ 19754744 (-) True G146347
TU184124 lncRNA upstream 24130 19756247 ~ 19757237 (-) True G146348
TU184135 lncRNA upstream 39655 19771772 ~ 19774991 (-) True G146358
TU184261 lncRNA upstream 317999 20050116 ~ 20052921 (-) False G146461
TU184262 lncRNA upstream 317999 20050116 ~ 20051755 (-) True G146461
AMCG00005229 mRNA downstream 34952 19664101 ~ 19669052 (-) True AMCG00005229
AMCG00005230 mRNA downstream 76368 19623255 ~ 19627636 (-) True AMCG00005230
AMCG00005228 mRNA downstream 103721 19575236 ~ 19600283 (-) True AMCG00005228
AMCG00005233 mRNA downstream 174322 19523812 ~ 19529682 (-) True AMCG00005233
AMCG00005234 mRNA downstream 211489 19488650 ~ 19492515 (-) True AMCG00005234
AMCG00005240 mRNA upstream 26456 19758573 ~ 19761337 (-) False AMCG00005240
AMCG00005250 mRNA upstream 52757 19784874 ~ 19799356 (-) True AMCG00005250
AMCG00005249 mRNA upstream 67617 19799734 ~ 19805056 (-) True AMCG00005249
AMCG00005251 mRNA upstream 114674 19846791 ~ 19855209 (-) True AMCG00005251
AMCG00005252 mRNA upstream 125741 19857858 ~ 19878152 (-) True AMCG00005252
TU184064 other downstream 130686 19570059 ~ 19573318 (-) True G146313
TU183873 other downstream 688341 19014547 ~ 19015663 (-) False AMCG00005214
TU182803 other downstream 4736381 14964579 ~ 14967623 (-) False AMCG00005077
TU182413 other downstream 6367258 13336209 ~ 13336746 (-) True G145046
TU182157 other downstream 7547626 12154125 ~ 12156378 (-) True AMCG00005011
TU184128 other upstream 26115 19758232 ~ 19761446 (-) True AMCG00005240
TU184245 other upstream 288593 20020710 ~ 20023507 (-) False AMCG00005256
TU184246 other upstream 288593 20020710 ~ 20023507 (-) False AMCG00005256
TU184357 other upstream 542274 20274391 ~ 20279746 (-) True G146532
TU184470 other upstream 877237 20609354 ~ 20610643 (-) True G146618

Expression Profile