RNA id: TU184124


Basic Information

Item Value
RNA id TU184124
length 816
lncRNA type inter_gene
GC content 0.47
exon number 2
gene id G146348
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 19756247 ~ 19757237 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

NNNNNNACGCGAAAGGCGGCAAGAAATTTGGGAAAGGAGGGAAGCAGAATAAGAGACCTGGCAAGGACACCCGGAGGAAGATGAAGAATCGCTCTCGATAGGTACAGTCCGGAGGAGAGCAACCTCTGCGGTCAAACTGGGGTCTCTGAAGTCTGggtcatttgttttgtttttgtttttgtctgtacCGTTTCCGGCTCCAGTTTCTGGGCTGAGAGAACTCCTGCCAAGTCAGTTTTTGGCTCCTTTCCCCCTGCGCAACACCCCAGACAAGTGGGTTGATATCTCTGGACCTTTTTTCAGCCCAGTCCCCTGAGCCAGCTGCAGAATGGTGTCGCTAAGCAAGGGCTCGGAATAGCTGCCTGACCTGCGTCTGGGGCAGCTCTGGCACATGTCAGTGTGTTTTCTTGGGCATCCAGGGAGACTGTCCGCACAGACGCTCGGTGGCTTTGACTCGGAGTCATGTTGGCGAAACCTTTTAATTTTCTCTCCAAAGCAAGCAGGACAGCAGCCTCTGGACAGTCGCACACATGACTGGACTAAATAATAAACACGTGGTGAATTTGGTTGAACTGCACTTGGCTTGTTCTTGAGAATATGAGGatctggttaaaaaataaaacctgaatttGACTTAAATTCATGAATAATTTGTGCTTGGGCTTTccgatttgttatttttcttactgATAGACTTTACAGGACTAATGAAAATGGCATGCATTGTCACATGACCTCCCGACAAATGCCTGTGCCAGGAGTTTTGTGTCCCTTTGTATATATATCGCTAGTATCcaaaataaatgcctttttatt

Function

GO:

id name namespace
GO:0046116 queuosine metabolic process biological_process
GO:0008616 queuosine biosynthetic process biological_process

KEGG:

id description
ko03008 Ribosome biogenesis in eukaryotes
ko03030 DNA replication
ko04110 Cell cycle
ko04111 Cell cycle - yeast

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU184123 lncRNA downstream 1503 19754196 ~ 19754744 (-) True G146347
TU184074 lncRNA downstream 24130 19704004 ~ 19732117 (-) True G146322
TU184066 lncRNA downstream 145242 19610766 ~ 19611005 (-) True G146315
TU183990 lncRNA downstream 291272 19464007 ~ 19464975 (-) True G146257
TU183949 lncRNA downstream 536489 19218391 ~ 19219758 (-) True G146227
TU184135 lncRNA upstream 14535 19771772 ~ 19774991 (-) True G146358
TU184261 lncRNA upstream 292879 20050116 ~ 20052921 (-) False G146461
TU184262 lncRNA upstream 292879 20050116 ~ 20051755 (-) True G146461
TU184270 lncRNA upstream 305312 20062549 ~ 20063413 (-) True G146469
TU184290 lncRNA upstream 346389 20103626 ~ 20107827 (-) True AMCG00005263
AMCG00005241 mRNA downstream 14882 19726944 ~ 19741365 (-) True AMCG00005241
AMCG00005229 mRNA downstream 87195 19664101 ~ 19669052 (-) True AMCG00005229
AMCG00005230 mRNA downstream 128611 19623255 ~ 19627636 (-) True AMCG00005230
AMCG00005228 mRNA downstream 155964 19575236 ~ 19600283 (-) True AMCG00005228
AMCG00005233 mRNA downstream 226565 19523812 ~ 19529682 (-) True AMCG00005233
AMCG00005240 mRNA upstream 1336 19758573 ~ 19761337 (-) False AMCG00005240
AMCG00005250 mRNA upstream 27637 19784874 ~ 19799356 (-) True AMCG00005250
AMCG00005249 mRNA upstream 42497 19799734 ~ 19805056 (-) True AMCG00005249
AMCG00005251 mRNA upstream 89554 19846791 ~ 19855209 (-) True AMCG00005251
AMCG00005252 mRNA upstream 100621 19857858 ~ 19878152 (-) True AMCG00005252
TU184064 other downstream 182929 19570059 ~ 19573318 (-) True G146313
TU183873 other downstream 740584 19014547 ~ 19015663 (-) False AMCG00005214
TU182803 other downstream 4788624 14964579 ~ 14967623 (-) False AMCG00005077
TU182413 other downstream 6419501 13336209 ~ 13336746 (-) True G145046
TU182157 other downstream 7599869 12154125 ~ 12156378 (-) True AMCG00005011
TU184128 other upstream 995 19758232 ~ 19761446 (-) True AMCG00005240
TU184245 other upstream 263473 20020710 ~ 20023507 (-) False AMCG00005256
TU184246 other upstream 263473 20020710 ~ 20023507 (-) False AMCG00005256
TU184357 other upstream 517154 20274391 ~ 20279746 (-) True G146532
TU184470 other upstream 852117 20609354 ~ 20610643 (-) True G146618

Expression Profile