RNA id: TU184261


Basic Information

Item Value
RNA id TU184261
length 1357
lncRNA type inter_gene
GC content 0.54
exon number 4
gene id G146461
representative False

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 20050116 ~ 20052921 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCTGTGGCCGGCTCGCACACCGCCTCGCTGGGCTTGGCGTCCTTGCTGGACGGCTTCACCCGGCCTCCGCCCCAGAAGTTCAGCGGCTCCTTCACCTCCAGCGTGCCGGTGGAGGCGCTGCGGATGGCGGCAGAAGCCAGCAGCGGAGTGCGGAGGATCTCCATGGTGGTCTGGGCCGGCCGGCTCGGATGCGCGGTGCTGGACACGGAGAAGAGTGGCTTCAAAGAGCGCTTTGCAGTGCGAAAGGCGAGGATCCGCAAAGCGCCGGCCATGTTTTCCGTGCAGACGTGTGCGGCGGCTCTAGCTATTTCAAGCGCACGATCCCAGTCCCGGTCGTGAACTTTGTTTCTTGCTCTCCTTTGCAAAAATGAAGGGATGCAATTGCAACGTCTTACCTACCGCTGCCTTCAGCTTCAAgagcagatctgcgcagagcaGTTAATGATCTCCACTGCCTCCTATATACGGGACAAGCCGCACTTTGCACCAGGACGGCAGGGCTCGTGTATAAAGTGCACCAATGCACGGCTGCACTGGGGCGCACTTCACCACATTCCAAAAACAGTCCACACGGTGCAGTGTGTTCAGCACTCTGAATATGAGTGGAGCATCGGTAATGGATCATTTCTTCTGACACAATGAACACACAACACTTATGGGGACctcctcttttgtttttcttccttagtttatttattaaaacatgtatctTCATTTAATAAGTACCTCTGGGAAGGGAACAGACTAATAAAATCACACATGGGGGAGGAAAAACACAGACGACTCAGCCATATACCTGCCCCCCCGGCCACGGCTTTCTGCTGCAGTAGTCCGGTGCGTTGTCCCACAGACGGACAGATACACGAGCTGAGTGTTCGGTTACCTCTAACAAACAGGTCGGttattaaactaataaaatgGCTCCTAAGAGTGGCTCCTTGTAAAAGACTGACTACTAGTACTGATATGCCAGTAATTTAACAAGGACTTGGTAAAGCTGGGTCATTTCggtttattattacaaaaaacaataccatCGGGCTTTCGAGTCCTGCAGATAAGAAACACTAAAAGGTAAAATCGATGGCAAAGCACAGAAATGTCTGTAGCACCAGGTCCAGCAGCTGGACCGTTTAATAACTCGAGGGTGTGATTCGTGTTCTTCACAGAAGAGGGCAGCCtgtcccatctctctctccatctctctcctcccccgTCTCTGCTCTGGCAGTGTGTAGGCTGGGCTGCAACCACGGCGCAGGGTTACGAGAACTTGGCAGCCTGCGGCGGCGGCCCCAGGAAACCCCCGGCCTGTTTGGTGGCCGCGCGGGACGGAGCCAGACCCAGCATCTTCTGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU184135 lncRNA downstream 275125 19771772 ~ 19774991 (-) True G146358
TU184124 lncRNA downstream 292879 19756247 ~ 19757237 (-) True G146348
TU184123 lncRNA downstream 295372 19754196 ~ 19754744 (-) True G146347
TU184074 lncRNA downstream 317999 19704004 ~ 19732117 (-) True G146322
TU184066 lncRNA downstream 439111 19610766 ~ 19611005 (-) True G146315
TU184270 lncRNA upstream 9628 20062549 ~ 20063413 (-) True G146469
TU184290 lncRNA upstream 50705 20103626 ~ 20107827 (-) True AMCG00005263
TU184289 lncRNA upstream 55204 20108125 ~ 20109530 (-) True G146487
TU184317 lncRNA upstream 93164 20146085 ~ 20147354 (-) True G146503
TU184375 lncRNA upstream 263139 20316060 ~ 20321620 (-) True AMCG00005270
AMCG00005258 mRNA downstream 6773 20030569 ~ 20043343 (-) True AMCG00005258
AMCG00005259 mRNA downstream 23411 20024174 ~ 20026705 (-) True AMCG00005259
AMCG00005256 mRNA downstream 26620 19999167 ~ 20023496 (-) True AMCG00005256
AMCG00005257 mRNA downstream 55452 19981534 ~ 19994664 (-) True AMCG00005257
AMCG00005243 mRNA downstream 133749 19907086 ~ 19916367 (-) True AMCG00005243
AMCG00005263 mRNA upstream 50705 20103626 ~ 20107723 (-) False AMCG00005263
AMCG00005268 mRNA upstream 67859 20120780 ~ 20126843 (-) True AMCG00005268
AMCG00005264 mRNA upstream 74238 20127159 ~ 20131739 (-) True AMCG00005264
AMCG00005269 mRNA upstream 94491 20147412 ~ 20159101 (-) True AMCG00005269
AMCG00005267 mRNA upstream 110430 20163351 ~ 20174057 (-) True AMCG00005267
TU184245 other downstream 26609 20020710 ~ 20023507 (-) False AMCG00005256
TU184246 other downstream 26609 20020710 ~ 20023507 (-) False AMCG00005256
TU184128 other downstream 288670 19758232 ~ 19761446 (-) True AMCG00005240
TU184064 other downstream 476798 19570059 ~ 19573318 (-) True G146313
TU183873 other downstream 1034453 19014547 ~ 19015663 (-) False AMCG00005214
TU184357 other upstream 221470 20274391 ~ 20279746 (-) True G146532
TU184470 other upstream 556433 20609354 ~ 20610643 (-) True G146618
TU184860 other upstream 1691955 21744876 ~ 21745453 (-) True G146938
TU185079 other upstream 1918114 21971035 ~ 21982521 (-) True AMCG00005363
TU185101 other upstream 1977904 22030825 ~ 22035272 (-) False AMCG00005362

Expression Profile