RNA id: TU184262


Basic Information

Item Value
RNA id TU184262
length 1535
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id G146461
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 20050116 ~ 20052921 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TAACAGGTCACAACCATCTTTAACACATGGAAAGCACTGGAAAACAAATCCAGGTTATTGTGCAGGACTGCACCCAGCTGTATAGACGTGATTCTTTGGGTTTAGAAGTGGGGGCATCATGCACTTGCCTATTTCTTATAACCACTTTGTGCATCTATAGTCTGGTTTTGCAGAGTATGTAACCATAGTGGGGCAGCAGCTCACTTTGcacaaacattttgtttttaaacaacgttttacaatataaaccatcttaatttaataacttaatGTACCCACTTTTACCACTTACAAGTACTTATAATTGTCCTTTGGCTATCAGTGCCTCTGATTCACACTGGTAAATGGAGAAATTATTttactgtgaatatatatattaaaaatcccAATCTGAAATGTCACCCCTTGAGTCAATACTTgctggaagcacctttggcagcagtgACAGCGAGGCCACTGGGATCGACGATGTGATACCCAGTGACTCCAAAATGACACAATATTCTTCCCCATTCATTTCTATTGGGCACAAAATAATCTGAAACACAACCAAAAGAGATGGTGAATACATCGAAGTTTGTAGTCATTATTTTGCACAAGCTAGATCATTTTCCCTCCCTCCACATGTCCCCTTAGGCGTTCCATAGCATGTCGTTTATAGGGCTCAGAATTCCTATAATATTCCCGCCCTCCATATCCCAATACTCACACCTGAAATATTCAATTTCAGATTCCAAAAACAGTCCACACGGTGCAGTGTGTTCAGCACTCTGAATATGAGTGGAGCATCGGTAATGGATCATTTCTTCTGACACAATGAACACACAACACTTATGGGGACctcctcttttgtttttcttccttagtttatttattaaaacatgtatctTCATTTAATAAGTACCTCTGGGAAGGGAACAGACTAATAAAATCACACATGGGGGAGGAAAAACACAGACGACTCAGCCATATACCTGCCCCCCCGGCCACGGCTTTCTGCTGCAGTAGTCCGGTGCGTTGTCCCACAGACGGACAGATACACGAGCTGAGTGTTCGGTTACCTCTAACAAACAGGTCGGttattaaactaataaaatgGCTCCTAAGAGTGGCTCCTTGTAAAAGACTGACTACTAGTACTGATATGCCAGTAATTTAACAAGGACTTGGTAAAGCTGGGTCATTTCggtttattattacaaaaaacaataccatCGGGCTTTCGAGTCCTGCAGATAAGAAACACTAAAAGGTAAAATCGATGGCAAAGCACAGAAATGTCTGTAGCACCAGGTCCAGCAGCTGGACCGTTTAATAACTCGAGGGTGTGATTCGTGTTCTTCACAGAAGAGGGCAGCCtgtcccatctctctctccatctctctcctcccccgTCTCTGCTCTGGCAGTGTGTAGGCTGGGCTGCAACCACGGCGCAGGGTTACGAGAACTTGGCAGCCTGCGGCGGCGGCCCCAGGAAACCCCCGGCCTGTTTGGTGGCCGCGCGGGACGGAGCCAGACCCAGCATCTTCTGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU184135 lncRNA downstream 275125 19771772 ~ 19774991 (-) True G146358
TU184124 lncRNA downstream 292879 19756247 ~ 19757237 (-) True G146348
TU184123 lncRNA downstream 295372 19754196 ~ 19754744 (-) True G146347
TU184074 lncRNA downstream 317999 19704004 ~ 19732117 (-) True G146322
TU184066 lncRNA downstream 439111 19610766 ~ 19611005 (-) True G146315
TU184270 lncRNA upstream 10794 20062549 ~ 20063413 (-) True G146469
TU184290 lncRNA upstream 51871 20103626 ~ 20107827 (-) True AMCG00005263
TU184289 lncRNA upstream 56370 20108125 ~ 20109530 (-) True G146487
TU184317 lncRNA upstream 94330 20146085 ~ 20147354 (-) True G146503
TU184375 lncRNA upstream 264305 20316060 ~ 20321620 (-) True AMCG00005270
AMCG00005258 mRNA downstream 6773 20030569 ~ 20043343 (-) True AMCG00005258
AMCG00005259 mRNA downstream 23411 20024174 ~ 20026705 (-) True AMCG00005259
AMCG00005256 mRNA downstream 26620 19999167 ~ 20023496 (-) True AMCG00005256
AMCG00005257 mRNA downstream 55452 19981534 ~ 19994664 (-) True AMCG00005257
AMCG00005243 mRNA downstream 133749 19907086 ~ 19916367 (-) True AMCG00005243
AMCG00005263 mRNA upstream 51871 20103626 ~ 20107723 (-) False AMCG00005263
AMCG00005268 mRNA upstream 69025 20120780 ~ 20126843 (-) True AMCG00005268
AMCG00005264 mRNA upstream 75404 20127159 ~ 20131739 (-) True AMCG00005264
AMCG00005269 mRNA upstream 95657 20147412 ~ 20159101 (-) True AMCG00005269
AMCG00005267 mRNA upstream 111596 20163351 ~ 20174057 (-) True AMCG00005267
TU184245 other downstream 26609 20020710 ~ 20023507 (-) False AMCG00005256
TU184246 other downstream 26609 20020710 ~ 20023507 (-) False AMCG00005256
TU184128 other downstream 288670 19758232 ~ 19761446 (-) True AMCG00005240
TU184064 other downstream 476798 19570059 ~ 19573318 (-) True G146313
TU183873 other downstream 1034453 19014547 ~ 19015663 (-) False AMCG00005214
TU184357 other upstream 222636 20274391 ~ 20279746 (-) True G146532
TU184470 other upstream 557599 20609354 ~ 20610643 (-) True G146618
TU184860 other upstream 1693121 21744876 ~ 21745453 (-) True G146938
TU185079 other upstream 1919280 21971035 ~ 21982521 (-) True AMCG00005363
TU185101 other upstream 1979070 22030825 ~ 22035272 (-) False AMCG00005362

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
rainbow trout (Oncorhynchus mykiss) TU1407592 True 1820 lncRNA 0.45 1 NC_048578.1 26970392 ~ 26972211 (-)