RNA id: TU184317


Basic Information

Item Value
RNA id TU184317
length 797
lncRNA type inter_gene
GC content 0.51
exon number 2
gene id G146503
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 20146085 ~ 20147354 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCGTGCCATTATTCTCCTTTGAGAAGAAATTAGGAGGTTCTACCTTTTGCAAATAgtctttattgaaatgtactacaattttacaaaaagaaaaaaaaagttgaacatGGGGAAGAAACACTATTTACAGAAGAAATAACAGTAAGAGCTGCGAGGTGAGGGAGCGTGCTGGTGGGGAGGGGAGTCACAGAACTGCCATCTTCAGGGGGGTCCATCACGCCGAGCTCTCCACGGGGGCGGTGGGCTTCTCGGGCTGTGGGGGGGGCAACGAGGAGAGAGGGGTTGAGCTTCAGCCAGATTTTAAACCCAGAGAATGAAGTTCaaacatgcattaaaaatacaatcctTCCAATAGAGGGGGAGAAGGGACATTTTTCAATCATGCAACAGCAACCCTCTCCCCCAGGCCAGACCAAAGCTTCCTTCTCCAAAACCAAGTGCCACAAGCACTCGCACCAAGACACCGCTCCTCTCCACACAGCCGTTGTACACAAAAATCGCCTGAACCTCAAGCCAAAATGGGCGCCCATCCTACAAGCCACCAGCACTCGCCTCTTCCTGCTCCATTTTCTCCTCAACGCCATTGCGGTTGCCGGCAGACTCCCCGCTGCCATTAACCGCGGACTCCTGTTTGGGCTTTTTAGCGTCACTGTCCTTTAACGGGCTCTGCTCCTCGGGTTTCCTCTTCCTGACCAGGTGGGAGATGTCAGAGGCCGACTTGGAGGAAGACGCGGCTTCTGCTGGTTTCACTGGGATCTGAAACACAGTGGGACCATTTCAAACGTCatgaacctctg

Function

GO: NA

KEGG:

id description
ko04110 Cell cycle
ko04114 Oocyte meiosis
ko04914 Progesterone-mediated oocyte maturation

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU184289 lncRNA downstream 36555 20108125 ~ 20109530 (-) True G146487
TU184290 lncRNA downstream 38258 20103626 ~ 20107827 (-) True AMCG00005263
TU184270 lncRNA downstream 82672 20062549 ~ 20063413 (-) True G146469
TU184261 lncRNA downstream 93164 20050116 ~ 20052921 (-) False G146461
TU184262 lncRNA downstream 94330 20050116 ~ 20051755 (-) True G146461
TU184375 lncRNA upstream 168706 20316060 ~ 20321620 (-) True AMCG00005270
TU184402 lncRNA upstream 344817 20492171 ~ 20494411 (-) False AMCG00005276
TU184406 lncRNA upstream 374295 20521649 ~ 20523818 (-) True G146576
TU184408 lncRNA upstream 387014 20534368 ~ 20535200 (-) True G146578
TU184451 lncRNA upstream 451885 20599239 ~ 20599503 (-) True G146607
AMCG00005264 mRNA downstream 14346 20127159 ~ 20131739 (-) True AMCG00005264
AMCG00005268 mRNA downstream 19242 20120780 ~ 20126843 (-) True AMCG00005268
AMCG00005263 mRNA downstream 38362 20103626 ~ 20107723 (-) False AMCG00005263
AMCG00005258 mRNA downstream 102742 20030569 ~ 20043343 (-) True AMCG00005258
AMCG00005259 mRNA downstream 119380 20024174 ~ 20026705 (-) True AMCG00005259
AMCG00005269 mRNA upstream 58 20147412 ~ 20159101 (-) True AMCG00005269
AMCG00005267 mRNA upstream 15997 20163351 ~ 20174057 (-) True AMCG00005267
AMCG00005265 mRNA upstream 28143 20175497 ~ 20180979 (-) True AMCG00005265
AMCG00005266 mRNA upstream 35026 20182380 ~ 20186437 (-) True AMCG00005266
AMCG00005270 mRNA upstream 173237 20320591 ~ 20339165 (-) False AMCG00005270
TU184245 other downstream 122578 20020710 ~ 20023507 (-) False AMCG00005256
TU184246 other downstream 122578 20020710 ~ 20023507 (-) False AMCG00005256
TU184128 other downstream 384639 19758232 ~ 19761446 (-) True AMCG00005240
TU184064 other downstream 572767 19570059 ~ 19573318 (-) True G146313
TU183873 other downstream 1130422 19014547 ~ 19015663 (-) False AMCG00005214
TU184357 other upstream 127037 20274391 ~ 20279746 (-) True G146532
TU184470 other upstream 462000 20609354 ~ 20610643 (-) True G146618
TU184860 other upstream 1597522 21744876 ~ 21745453 (-) True G146938
TU185079 other upstream 1823681 21971035 ~ 21982521 (-) True AMCG00005363
TU185101 other upstream 1883471 22030825 ~ 22035272 (-) False AMCG00005362

Expression Profile