RNA id: TU184357


Basic Information

Item Value
RNA id TU184357
length 4303
RNA type TUCP
GC content 0.48
exon number 2
gene id G146532
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 20274391 ~ 20279746 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTAACAACAACATGCATTTACAcgacagttaaaaaataaaaagatattgCACTGATTCAATCTAATCATGTCTCACAACCCTACAGCCTCCACCTCATCGCACTGCAACTGCAGCCCCCCCACCTCTCACAGAAGAGAAAAACCACccccacaacaaaataaaatctccaCAGTTCCCCCCGCGCTCCTATACATTCACACCGCCCCCCCAGCCTGCCAGGTCGGTCCCGAGGCTCCGGCTCCTACACAGAGACACCCAACACTGCTAACACTGCGCACACACGGcttatatacaataaatatgtttttgtttgtttattcttttaaaattcTAAACACATGgatgttaaaaacacacaggcGTGGTCTAGGCATGTACAGGTGTGTGGTGTCGGGGGGGCTGGCGGAGAACACGCACACGGGAAGTGGAGGGGTGGGAGACCAGCCGGGAACGAGAGGTCTGTTCTCCGGCCTCGGTCCAGACTGAGGACTGTGGATCTGAGGTCGGGCCAGAGAAGAAGCGGATGGAGGCTGGGGGGTGCCAGAGACCCTCCCACACACCAGGGGGCAGCGTACAAAGTGCGTTCGCCTAGAAAGCACCGTCTACACGTCACCTGCTGCAGACAACGCACTAGAAACGCCccacgagagagagagtgtcctGAAGGGGGGAAACAACATGAGGGGTGAGGATTTAATCATCTCAAgaaacttttaatttatttgtcttgttttaaaagcaggctGTGGCCATGAGAAACTGCGGTTTAcgctgaaaagaaaaaaaagtgtgtgtgtgtgtgtgtgtttctacaGGGGGAACTACATGACTGTGTTCCATGTTCTCAGATTGGTTGAACCTCATGCATCTCAAATAtccattattaatttttttaagagtCTAATAGAGACCAATAGGCCAGTGGTCAGTGAGTTCTGAGCCGAACCACCGCTCCGGTTCATAGATTCATCTTCTAATTACGAGCAGACGAATCCAGGAGTCGATATGATGAATCCACGCAACGACGGTGCACAGTGAGTTTTGACCGCTTAGCATAACCCTCCTGGATGTCATGTCACACCTCCGGCTACGCAACAAATCACTGGCAGGGAGTCAGATCTGTAAATTCATCTCACGGTTCATACGAAACcgctttattttgttattctcgctctctctctatgCTCGTATAAACTTTCCCACACCGGGGCTGTGCGAGTCTTTAAACCATAACCACACACTCAGGGAGTCCAGAGTTAATtccagagagaaaaaataaaaaatagcatgCAATTAAACCCGTGAACGCTGCAGTAACAGGagtaaaatcttaaaaacactaaaaacgaAACGTGCAAGACATCGCCTAAGGAATGACTGTGAGGAATCTGACTCTGTACCCCTTTCTGGAAAAGCAGGAGAGGACAGTCTGTGCAAGGCGGTTTGCCAGCCGTCGTTTACCGTCTCGCCACCGCGGTACGGTCTGTGTGTTCCGCCCCGGGGGCCGATGGTGCCGATTTCATTAACcaggaagaagaggaaaaagtaaaactaaagaATGTATAACACCAACACGGGGAAGCAATTTTCTCCATCTGATTAGAGCTGCAGGCTGGCGGGGTCTGTGAATGCGAACGTGCTCGGGAAGCCGTTTCTCTCGATCCAGAGAtgctaattaaatcaataccgACGGCTCTGGCGGCCGGCGAGAGGAGTCTGCTTCAATTcaacactatttatttaattattcccTGGTTAAGATTCAAAACTGGCATcttaaaacaatcataaaatcGTCCTCGGGGGAAGGGAACAAAATCAAACGGGTTTACGCTGATAAATCAATGAATCCGAGCAGCTGCTCTCTCTCGGTTTGAGAGGGTCTCTCGGGGGTCCGGCGGTGTGGAAAAAGAAGACCGTTACGATcgttttaaaaaacagatttcagtTTAACTTGGCtttgtttattgctttattCCTTCTCCTGTTTTTGcaaattgtaatataaaaaatatgattcaaTGATCAGTGAGAACTTCCTCGACTTTTAAAAGGAATAAAGTATTTCTGGGAAGTAAAACGAACCGCTTCAGTTTCCCGCTCGGGATGCCGCTGACGTTCAGAACCACGTTCCTCCTTTGATCCATTCAACTGCAGTTATATTTCCGTGCTGTTATAACCGGGTCAGGTGTCTGTATCCCCtctcccccccatctctctcttcgCTCTGGCACAATCTGCCTTTCATTTAGATAAGCAGGATGTGACCAACCGACCCGTTCGGCCCGTCTCTCCCTGCCCTGGGCTCAGATAACGACAACGGAGAGGTGCCCAGTGTATTGTGGGAGTTTCCTCTCAGTCTCACAGAGCTGCGTATCAACTGATCGCCACACACTAAAGCTGGGCATCCGCGACTCAACCGGAAGTCTAAAACGGGCCAAACCATCCCTCTATTTCCATCCTTACAGTGGTGCCAAACCCCAGGGGGCCGCCAGTGAGATCAGGACTCTTATCTTAAAAAGTGTTTCACAGGACTGGGTGGCCAGTGCCGGGTTTGGCCTCGTAGTGGTCGGGGACTCGAGCTTTGGAGGGAGGAGTCTCACAGGGACCCGTGTTTGGACCGGGGCTAGCGATGAACACAACGCAGGGAGTCAAGAGTGTTTTTGGAGAAAGTTTACTTCACAGCCAGAAGGGATTTGGAGTACAGGGATTGCGAATGCCTTCCCAATTGGAGGGTTCAGTTTGCGAGTCTCCAGCCATCAACCCTCCCAACATCACACACCGGCACACCGACAAGCAACGGGGGGGAGAAGATACCCTGAAACACACGTGCGTCCGGTGCGACGCACTCGACACTCACAACGCGGGTCTCTCTCGATCGACAGGGGGCGGGAAATCCACAGGGGACACacgctcacgcacacacacgtacacagtGAAACCTGCTAGCGACGGGAGAGAGAACAAAAGTAaacaacacacagatacacagcaAGTTGGTCCAGATACAAAAACACTCAAGTACACTCTGAAACGGATCTGAAACAAACAGTGGCAAACGGGAGAGCAGGgctagaaataaagaaaacgtATTTCAATGTGATATCCCCGCCCTTCAACTAACAGAGTATATCGACGGGATTGTAGACCGTAAACAAACGAAGTGGCTCATGTTTGCAAAACGACAAGTACAAATCATCGCTGTTTTTGGCTACTTATTTCagtacaaactttttttttttttattattattatttttcacaaaaacgttcatatatttatatataatcgTACAAATATCAACATCTCAAAACGGCGAATGTTTGCGGAGTGGATACGATAATGACCGAGCACTTCTCAATAGATCCCCCTAAGCACTGATGTGTAGTTTTGAACCCACGAGAGCCGGCACTGGGACCCCGCAGTCGAGCCGCATGAAGCCGGGTCTAGCTCCCTCGGAGGAAACATGGGTCTCTCACAGCCACGTGAGGCAGGACAAGACTTTGAGCAGCACACTACTCCTACTACAacactcaaaacacacacatatatagatacacacacttAACTATGACAGGAGTGCCAATGAAACGGTAACGGACATCTTGGCAAGCGAAGACGGTGCCATGCGGCCATCGCGGAGAGCTGGCGTGGTTCTGGGCGGTGAGCGAGTCGATGCGGGCGGTTTCAGTCGGTCTAGAGAACTACAGGAGTTTCTGCGGAGAGTTTTTTCTCCTCTTCGTCTAATGAAATGCACGATGGAGCCACTCGACACGAGGCGGGAAACTCAGTCTGTTTTCCTGCGTGCGTGTGGTGCCGTGTGAACAAGTGGCAATacaggctttgtttttttattatttacttaaatgtaatttatacaaATTGCTAAGCATACGCTACTTTTATTGCTGAAATACATCAATTTAACCGTACGTTTCTCTcgggggggaaaaacacatgCGGGCGGGAGCGAGATATTGAGTTCGTTAAGGCACAACCTGCTCCATTGCCTGGAGGACAGATGCGGGCTCAGACAGTCTCCCAGCGCAGAGACACGGCAAAATCAaggtgtgtgcgtgcgtgtgtgtgagaagcCCACTCTCTCGGCACAGACCAGATCAGTCACACGGTTTATTTCTAGCCCTGCCGGTTACGGAGAGAAGCGCCGAGGTCACTCGCtctcctggaaaaaaaaacaacaaaaaaaacaacaaaaacatatgcAGCGGTATGGAACTGAGGAGTGTGTCTGAAGTCACACAGACGTGTTTACAGCTGAACATCGGTTCTCTCAGAATTAGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU184317 lncRNA downstream 127037 20146085 ~ 20147354 (-) True G146503
TU184289 lncRNA downstream 164861 20108125 ~ 20109530 (-) True G146487
TU184290 lncRNA downstream 166564 20103626 ~ 20107827 (-) True AMCG00005263
TU184270 lncRNA downstream 210978 20062549 ~ 20063413 (-) True G146469
TU184261 lncRNA downstream 221470 20050116 ~ 20052921 (-) False G146461
TU184375 lncRNA upstream 36314 20316060 ~ 20321620 (-) True AMCG00005270
TU184402 lncRNA upstream 212425 20492171 ~ 20494411 (-) False AMCG00005276
TU184406 lncRNA upstream 241903 20521649 ~ 20523818 (-) True G146576
TU184408 lncRNA upstream 254622 20534368 ~ 20535200 (-) True G146578
TU184451 lncRNA upstream 319493 20599239 ~ 20599503 (-) True G146607
AMCG00005266 mRNA downstream 87954 20182380 ~ 20186437 (-) True AMCG00005266
AMCG00005265 mRNA downstream 93412 20175497 ~ 20180979 (-) True AMCG00005265
AMCG00005267 mRNA downstream 100334 20163351 ~ 20174057 (-) True AMCG00005267
AMCG00005269 mRNA downstream 115290 20147412 ~ 20159101 (-) True AMCG00005269
AMCG00005264 mRNA downstream 142652 20127159 ~ 20131739 (-) True AMCG00005264
AMCG00005270 mRNA upstream 40845 20320591 ~ 20339165 (-) False AMCG00005270
AMCG00005271 mRNA upstream 90922 20370668 ~ 20391561 (-) True AMCG00005271
AMCG00005276 mRNA upstream 211305 20491051 ~ 20502206 (-) True AMCG00005276
AMCG00005277 mRNA upstream 244300 20524046 ~ 20525301 (-) True AMCG00005277
AMCG00005275 mRNA upstream 262356 20542102 ~ 20547367 (-) True AMCG00005275
TU184245 other downstream 250884 20020710 ~ 20023507 (-) False AMCG00005256
TU184246 other downstream 250884 20020710 ~ 20023507 (-) False AMCG00005256
TU184128 other downstream 512945 19758232 ~ 19761446 (-) True AMCG00005240
TU184064 other downstream 701073 19570059 ~ 19573318 (-) True G146313
TU183873 other downstream 1258728 19014547 ~ 19015663 (-) False AMCG00005214
TU184470 other upstream 329608 20609354 ~ 20610643 (-) True G146618
TU184860 other upstream 1465130 21744876 ~ 21745453 (-) True G146938
TU185079 other upstream 1691289 21971035 ~ 21982521 (-) True AMCG00005363
TU185101 other upstream 1751079 22030825 ~ 22035272 (-) False AMCG00005362
TU185105 other upstream 1756849 22036595 ~ 22101862 (-) True G147109

Expression Profile