RNA id: TU184369


Basic Information

Item Value
RNA id TU184369
length 5740
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G146544
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 20316007 ~ 20333122 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CACaattgaacaaaatatttttctttattctgcAAGAGAAATGAGTATTGTGGAGTTTTGTCAATGTTATACATGAGTTTATCCCATAACAAATGGAGATTTCTACAACCAATACAAACTATTGCAACAGATACAAGAAAAAATTTGTACTGtgatgaaaaatgtaactgaatgatACCTAGAAGCCTGAAGCAATTATTGTTGCGATACTGAGAAAGAGGCCGTATGTacgaaggaaggaaggaaacgCAATAACAACGCAATAACAAAACGGGGTCTGTAATATCCTGTACAACAACAACGACCAATCGGCGGATTGTAAGTCGGACACAGGCAGGGCTTTCCAGGAGAGCAAAGGACAGACGTAGCGTGAACTTCAAACTCACCGAGTGAAGATGGAAGCACATTTGCATGAGACTGAGATTTTAGTCTCCTTGTGTCACCAGTTACTTTTGTCCACAGATGGACTGTAAGAGCCAATGTGTTATTgcttatactgtattttaaataatccaaTCTAATGTGATCagacaaatacagtacaaagtCATGTCATTGGCCTAATTAAGTTTCCGGAGCAGGCCTTGAAATGACCTGAATAAGGTGCAACAaagaacagcatttttttaattgaatattcaACGAAGCCAATCActatgataaaacatttaaagcaggaagttttgaaatgtatttttttttttttttggtgtgtacAGCTTTAAATATGCATTGGCAAAggatttggtttatttattaaaagaaaatgtagggAAAGTGAAACAATTACAACCAAACAGTCTGTATTGCTCTGGTCAATAGCCTCTTTCTcagtatatatctttttttttttttttttttttttaattttgtatatatgttaatCTTTTTTAAAACCACTACAGTTGTACAGGGTCCTAAATTGCTGCAGCGTTAAGCAGTGCCTTGTATTCTCAGCTATATTAAATTCAGTTTGTATACACCATTAACagacaaataacttttttttttttttccacaaaaaaacaacagtcaaGAGTACCAAAGATGCATGCTGGGTTTTTGTAAATATGTCaaaaggggggaagaaaaatggTGAGCCAgggttttctttcattaaagaTGCAGTATCCCTTTAGTAAGCTGTGGCCAGGACTCTGTGCAAGCCAGCAGTCatatgaacagaagaaaaagattCCTGGTGAAATATTCAACATATTAAACCCAACTGCAAATAAAACTTTGCAGGGCTATGTGGGGAAAACTGaaaatttcaaaattaatttccctCAATCAGACCGCTCTAGCTGCAGTTCGGGATCGGCCAAACTCTGGCCGTCCGGAGCTTCGGCTTAGTCTTTTAAAGAGAAACCACTCGGGGAAAGATGTCAACATGAACTATATTCTTTTGGTCTATCCACCATCAATCATTTTCCACCCAAATTATGCAAGGTTTGCTCGGCTTGGTTTCGTCTTTTCCTCAGGTGATAAAAAGCAACAGCATTCATTCACGGATTTAGCCAGTTTCTTGGTTGAACCACAAGCAATGCTCTTTTGACCCTGGAAATGCGAACAGACAAAAGGATATTGcgttgtttggttttgttttcatctgtagTGAAAGAACCAAGAACCCACAGATCAGTACAAATCGTAGCGCTTTCTGCCCTGCAGAGAACGACAATCACTTTGTGAGAGACGAGCCCAAGTACCCGGGGACAGAGGACTTTAGGCATTTAAAATGGAGAAAGACATTTGCACCAGCTCGTGTGCAAATACAATACTGActaaactgaagaaaacaaatgcatatattggttaaaaaacaaaaaaacaaaacaaaacaaaaaaaacgctCTGCCGGTGAACCAAGTGTTGGTTGTGTCACAGAAACACTGATATAAAAGTGACAAGAAaattcagaaaagaaaactcaaaatacaaaaacacattcgtTACATCCTTCTTGCCTGCACAGTTACAAGGTTAAAAGCATTCAGAAAAGCGCAGCCTTCAGTTAAATCTGAGAAAAGTGtctgttaaacaaaacacagacatcgTTCCTCATCTAAAGCACAGATATGGATGACCACCCCGTCCATGCTGGCATTTCCCAACACCATTTAAAATCGGGTTTAACTGAAGTGGCAACCCAACTACAGGATTTATCAAAAAGgcattcagaaaaacaaagcacGTCCGCTTTTTATTGTAAGAACCTTTTCAAGAATATCCCTCAAACTATCGGtctcaaattaaattcaacttAAATCTTTGGTCTCAATGCcagaacaaaagcaaaaaaaacacaaaaccctcCTTCAAACCATCATTTGGGATCTAAACCAAAGTGTAGTGTCGGTCTTATCTCCGCTAACGTGACCATTTGACACGCGAACCGTGTTAAAATTAAACGCAAAACAAAACGTTGCTTTTAAGAATGACCAATGCTCTAAAACGGACCGTTTCGTCTGTTGAGCCAGAAGAATTGAAAAATCccatgggatttttttttttttttttttttttttaaatatatacacacacacacacacacacacacaccagacatTTAAATCCCATCTTGTGTACCATATCATCAGAAAAGGATTTTATATACCTGTATATATGCAtcataaaaacattcaacagtGAGCAATAATAGTTCAAGTAATAGAAACAGGCCCGTTTAAGTCCTGATTAGTTCCTCACACAACTTGTGGGGGAATGGGGATCAACTCAAATAAAGTCATGGATTTACAGTTTATAGACTGGAGCACAACAGCCGAGGAAAGCGCGGTCGAGCCGTTCCCTCAGTCAGTCCGGACATGCTGGCTTGGTGTGAGAGGGCTGGGTGAGGTTTATGGGCCAGAGGCGGCTTAGGCATCTCTCCcctccaaaaaagaaaaaacaaattgtgcagAGGGGGTGGCCCTACAACCTTAGCAAAAATGTACATACTTGTGATGTGGAAgagagcaaaaaaaacaaaaacagattaagAATGTACCATCTTaaccaaaaaaaattaaataaaaacgcCAGGAAGCGAGAGATTTTCCCGTATAAGAGATTCTGACCAGAGACGCAGCCTTGTGGAAAGGGCCGGACTGGGGCTGAACCGCAAGACCAGTCATCAGGTACAGCAAGTGtctttgcaatttaaaaaataaaataaaaatggattaaaaatcttaaatgcATCAAATATTCATAGGCTTCACTTTCATAGCCTAGCTTATTCCAGGATGTTCAGAGATGCGTTTAAACAAATTGAATCCAGACTACCAGCACAAAACGACTGCCTGTGGTTAAAACGTCAGCAAAGCACACAAACTATACCCTGAATGCACTGATTTCAGATGCTTGCAGAGGCCACTGAAGTGTGACGAAAGCAGACCCCTAAAAGAACGTCTGTCCGCATCCCACCGTACATTCAAGAGACGTCCGCTTATCCCCGCGATTTAAAACCCAAAGCGGAAACTAACTATTCTGTTGACAAGACTAAGACCTAGACCTCGCAGCACAAGAACATTCAAGAACCCAAGAACCAGCTGGGGACGTGGGGGTTAAACCGCTGCACTCTCTCTGAACAGGCCCCCGCATCGGCCCGGACTCTCGCAGTGCCCAGCGTCTCCACTCGTATCGTTTCAATAGTGCAGTATGCCATGGGGCAgggagaaaagggggaaaaaaaaaaaaagaagtataAGTTGATGCTCTGTATAACAAACCTTTGCATCAGATACATCCGTGCAGCTTCCCAAACTCAGGTTTGCCTGGAGGCAAATCAGTGCGTTTGGATGGTTTGGGTTTCCAGGCTGTCGGCTAACTGCTTTATGGGGAACGGTTCATCTGTCTCAGCCTGGGAGTCATCAGAACTGAACCCTGAAGGACAGATCCAGCTCTAGGCATTGCTTTAGATCCCCCTCTACCTAAAAACTCCTGGTTATGAGCAGCCACAGACAGGATATGGCCTACCCCCCCTATTCACTGGCTATTTTACCTCCatactttgtatttattcagtgtgtgtacgtgtgtggaGGGGGAAGGGTGTTAATCAATGCCTGACTTTGTAACCAGTCTGCAAAGTATACAATTACAATCCTCCTTTTTGCAGGCCTGTTTTATACAGACACCACAGGAGAAGTTAACATCACACAATGGCCACGTAAAGAGCACCACAGGGACTGTAGAGATTTGCAGTTTACCTGGATTAGCACTAATGATTATCTCAAGACAGAACTTTATAAACTGCAgacacacccccccccccccaaaaaaaaaaaaaaaaacctgcaaccTTAAGGCTTCTGGGTAAATCAGTGAGAGTGACTACCTGGATTAGATTCACCCCCACCTTTTCCTTCTCAAATAACACGCATTAAAAGCAGCCAATTGGCATGAAGAGAACCCATAATAATCCGGTGTATTGGGAAGGCCGAGCCAATAGTTTAAGCCTGAATGGGAAGCGGTTTAAAAATCTTTTACCGCAAACCCGGCTGCTGCGTTGGCCCATTTGTAATGGAATAACCTTGAGTTGTACCATTGCCACAACAGTggttaaaatgtatagaaaaggGGTCAGCTAGGGGTTCGGTGGAGCGCAGTGACGCTGTCGAGGAATTTTGTTGCCCATCCTCTTTGCAAATATCAATCAAACCTGGCAAAAAGCGATAGGATCCTGCAAGAAAGTCTCTAAATAGCCATTGTGAATGTAAAACTTTTAGTTTATTAATGCGACTTAAAAATCCCAAACAGGCAGCCAATGAGATGACTGGTTATAAAGTCAAGCACCATAAATAGGACCAGTATAAAAATCAGTTTTCTTCAAGGGTATATTGtgcatttgaattttttttatttgtttcggCCTTGTCTGTGCGACTGACCAGGGGATACTGCAGCTGTATATCCCACCAATAAATATCGGATTGCACTTCCTTCCATTCATATttgctaaaacattttttgactCTTAAACGCAAAACTGCTGTACCTGCTTAATCGTTCAAAGCTTATTAAAGTTCCATAAAAGAACAATCGCATATAACATCCCAATGTTAAAACGGACCGCTTATATTttccaccacacacacaaaacaaagggGTTTcagggttttttgttttccaaaatttGGTGTTGAAATGTGCAGCTGtagacattttactttttaaataagtgCTTCAAACTGAATTTCAGTGGGTACAATTTGGTTCAGAATACACTTTTGGAGCTTTAGTGTTATACAAGAGCGAACCCAAACGGTTTTCATGTGTGGCACAAAACAAAGCATCTTTGAGtttactttttcttctcttaATTCATTAAGTGGAGTTTCTCCAAGGCTAACTTTGGTCGGTTTCTACGGgacagaaacttttttttctgctttgtagGAAAACTAGCCAGTTCTGGAAGTCCAGCCAAACTAAAAGCCTGAAAACTAAAGTaaaacataccaaaaaaaacaaaaacaaaaaaacctccTGTGGCTTGAGTCCTTACAGTTTAAAAAGCGAGCTCTTCTTTAAGACTACAAAACTTCTTCCCCCGCTGCAGTCCGGCAGCGTCTCGGATGACAACCGGCACATTTCTGCGATGGTTTGCTACattccctgcccccccccaccccacccctcttAACATGGAGGGAAAAACAATTACTTCCATTTCTGGTTCCTTTCATTTAGACCAAAGGAaggatggagaaaaaaaatgggggaaaaaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU184340 lncRNA upstream 131364 20182354 ~ 20184643 (+) False G146519
TU184288 lncRNA upstream 206466 20108102 ~ 20109541 (+) True G146486
TU184248 lncRNA upstream 289946 20024173 ~ 20026061 (+) True G146450
TU184234 lncRNA upstream 304872 20007416 ~ 20011135 (+) True G146442
TU184126 lncRNA upstream 555216 19760152 ~ 19760791 (+) True G146350
TU184422 lncRNA downstream 309146 20642268 ~ 20655773 (+) True G146590
TU184426 lncRNA downstream 309650 20642772 ~ 20661600 (+) True G146591
TU184428 lncRNA downstream 309650 20642772 ~ 20712220 (+) False G146591
TU184435 lncRNA downstream 332961 20666083 ~ 20670169 (+) False G146596
TU184442 lncRNA downstream 349503 20682625 ~ 20683984 (+) True G146599
AMCG00005272 mRNA upstream 36430 20253009 ~ 20279577 (+) True AMCG00005272
AMCG00005273 mRNA upstream 106550 20208791 ~ 20209457 (+) True AMCG00005273
AMCG00005260 mRNA upstream 140676 20172733 ~ 20175331 (+) True AMCG00005260
AMCG00005261 mRNA upstream 167723 20141222 ~ 20148284 (+) True AMCG00005261
AMCG00005262 mRNA upstream 176059 20129229 ~ 20139948 (+) True AMCG00005262
AMCG00005274 mRNA downstream 151810 20484932 ~ 20489664 (+) True AMCG00005274
AMCG00005278 mRNA downstream 256624 20589746 ~ 20595754 (+) True AMCG00005278
AMCG00005279 mRNA downstream 264621 20597743 ~ 20627931 (+) True AMCG00005279
AMCG00005286 mRNA downstream 366635 20699757 ~ 20702472 (+) False AMCG00005286
AMCG00005287 mRNA downstream 408056 20741178 ~ 20742301 (+) True AMCG00005287
TU184347 other upstream 36221 20273513 ~ 20279786 (+) False AMCG00005272
TU184341 other upstream 131364 20182354 ~ 20184643 (+) True G146519
TU184056 other upstream 736200 19579573 ~ 19579807 (+) True G146305
TU183561 other upstream 2544482 17765257 ~ 17771525 (+) True G145932
TU183002 other upstream 4931395 15384243 ~ 15384612 (+) False AMCG00005105
TU184405 other downstream 188527 20521649 ~ 20524819 (+) True G146575
TU184436 other downstream 328804 20661926 ~ 20670169 (+) True G146596
TU184446 other downstream 366364 20699486 ~ 20702404 (+) True AMCG00005286
TU184526 other downstream 464336 20797458 ~ 20803180 (+) False AMCG00005280
TU184679 other downstream 1004310 21337432 ~ 21340712 (+) True G146790

Expression Profile