RNA id: TU184406


Basic Information

Item Value
RNA id TU184406
length 2170
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G146576
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 20521649 ~ 20523818 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GACTGCTCTTGCCGTGTTGTCTGTCTGGTGCTTTAGGAATGTGATTTAAACCCCCCAGAGGCTGAAGACTGGTATCAGACGCCCAGTTTGAGTCACTGTTCCCAGGTTCTGCAGTTCGTTTGCTCTGAAGCCACGTCTCTGAATcgatgtgtttttaaaaaagtgtaGCTCGGTGCAGTCCATCACTGGGACAGTAATGCGATTTATGTGAAAAAGAATAACCTGTGATTTAATGTGTGCAGTAAAAACATTCTTCGACACCTCGATGCTTTATCCTAACAAATGTAATTCCTAATTGCTGTCTGACGGTCCCTGTGCAGCTCAGTGATGTCAGCTCAAGTGTagaaataatgtgaaatgtgctgaaactaaatattttatatttatatataaaagtgtttttccCCAAGCATTTGAGGCAGAACCCTGTGTTCAATATAACCTCCTGATGCTCCTCAAACACCTTGCTAATAAAGCCACATGATTCCAGTGAAATCTGTAATTACAAGCCTGTATGTGCCTACGACCTTTTCTGAGACAACCAGTCGATGTGTTGCGTTTAGTTAACGCACTGTGCCGCCACAGTGTGCTGTGTGAACGTCTACAGCATGCAATGACGACACGCACTCCCGCGGAGCTACACAATCACAGCCTTCCTGTGATGCCCTGTTCTCGCTGTGGATTAGCCGAGTTTATTCCTGATTCCAGTATCTCTCTGTGTCATCTACCACTTATTGTTTCGCATCAATCAGGCCGACCGTCTTTATGTCCTGGAGAGAGATGAGGAGATTCCTCTCGGTGCAGCCCGACTGCTACTCTTCACAGTCCCCACGaggattttaaattacattggcTGTTTCCACCCGTGCAGCGTTTTAGTGCAGAGACGCGGGGCCGTGCCAACAGACGTTAGGGCTGATCCGTGGATGTCAGGCGGAACTGTAAAACAAGCAATGCCATGTGAAAACAATCAAGCCGGACTCGGGGAGTCACCGATGCCAAAACTGAGCTGCGAAATATGCAAAAGTCATACAATTATGTTTGCAATATTTTACCCTTTCCCTTCCCTTCACTTTTAAACTCCCAGTTCATTGACCTTGCTGGTGAACCAGGAGGAGTAATAGTGAACAGACACACAACCACGCGGTAATCGGCACCAGCACTGTGTCAGCCTGTCAACCTGTTGGTTTGGCTGTAGCATCAAAAAACTCTAAATTTTCCCATTCGAGAAGAATGCGTAAGCGCTAATGACAAACCACAACAAGCAATCAACCACGTGTTAACTCCAAAGCTCTTAGATCCTGATCAAGATTAGTCTAGTTCCTTCATGCCAGGGTTTGAacataaaagttaaaaaaatccTTCCCTGTTTCTTAACCCGAGAGAGGCAGTTCTGATGCTCAGACAAAGAATCTCACAGCGTCGGCACATTTTGAGTGTGTTGTGGTGGGTGGCCATCTTGTGCCAAGTGCTTTTGTACCCCATGGACATGTTAGGCCGTGTGTGTGAGCCGTGGTGCTAAGTGTTGTGCTTCAAAGGTACTGGCAGCGTCGCAGCAGCCCGTCGCTGATGCAGGGCTGTGATTGGACGGCTGATGACCTCAGCTGATTCCAGAACTCCCATCTCCAGGCAGGGAATGGGCCAATGAGCAGCATGCACTCTTTTAGGAGagtgttgtgttttgcatttaacaGCCGCCCCCCCTCCCCGGGACTGTCAGCCTGAACCCCAGGGTTGGTCAAGTCACCTGATCATtaatgaaagaagaaagaaagttCAGTGCAGCTTCTACTTCTTTGACTTTTCTTTAACCATTCTTTCTTTGTGTGCAAGAGGAAGTGAGGCCGGGGGGGCTGACTTTACTTCCTCACTTGTTGCTCgtggttttttttattttcttcttcgaTCATCATGGTATTCGCCAAAATCTCAATGCGCTCTTGAAGGGGGTGGGAGAGAAGCCATTCTGAAACGAGACGAAATGAACGGGGTCTTGCTGCCAACTTAGGCTTCCTTTTGGTTTTAGAACACGGTTGTTTATAAATTAGTGGTTTGTGAATTGAATAGcagtatttttttgtaagaaaagtgtctctctgtatgtatgAAATATGCATTACTGTTCTGAATAACATATGCAATGTACATAATGCCTATAGCCTGCCTGTGg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU184402 lncRNA downstream 27238 20492171 ~ 20494411 (-) False AMCG00005276
TU184375 lncRNA downstream 200029 20316060 ~ 20321620 (-) True AMCG00005270
TU184317 lncRNA downstream 374295 20146085 ~ 20147354 (-) True G146503
TU184289 lncRNA downstream 412119 20108125 ~ 20109530 (-) True G146487
TU184290 lncRNA downstream 413822 20103626 ~ 20107827 (-) True AMCG00005263
TU184408 lncRNA upstream 10550 20534368 ~ 20535200 (-) True G146578
TU184451 lncRNA upstream 75421 20599239 ~ 20599503 (-) True G146607
TU184453 lncRNA upstream 76356 20600174 ~ 20600514 (-) True G146609
TU184476 lncRNA upstream 110306 20634124 ~ 20636209 (-) True G146623
TU184485 lncRNA upstream 170997 20694815 ~ 20707606 (-) True G146631
AMCG00005276 mRNA downstream 19443 20491051 ~ 20502206 (-) True AMCG00005276
AMCG00005271 mRNA downstream 130088 20370668 ~ 20391561 (-) True AMCG00005271
AMCG00005270 mRNA downstream 182484 20320591 ~ 20339165 (-) False AMCG00005270
AMCG00005266 mRNA downstream 335212 20182380 ~ 20186437 (-) True AMCG00005266
AMCG00005265 mRNA downstream 340670 20175497 ~ 20180979 (-) True AMCG00005265
AMCG00005277 mRNA upstream 228 20524046 ~ 20525301 (-) True AMCG00005277
AMCG00005275 mRNA upstream 18284 20542102 ~ 20547367 (-) True AMCG00005275
AMCG00005294 mRNA upstream 115840 20639658 ~ 20643224 (-) True AMCG00005294
AMCG00005295 mRNA upstream 123738 20647556 ~ 20677947 (-) True AMCG00005295
AMCG00005293 mRNA upstream 184968 20708786 ~ 20709969 (-) True AMCG00005293
TU184357 other downstream 241903 20274391 ~ 20279746 (-) True G146532
TU184245 other downstream 498142 20020710 ~ 20023507 (-) False AMCG00005256
TU184246 other downstream 498142 20020710 ~ 20023507 (-) False AMCG00005256
TU184128 other downstream 760203 19758232 ~ 19761446 (-) True AMCG00005240
TU184064 other downstream 948331 19570059 ~ 19573318 (-) True G146313
TU184470 other upstream 85536 20609354 ~ 20610643 (-) True G146618
TU184860 other upstream 1221058 21744876 ~ 21745453 (-) True G146938
TU185079 other upstream 1447217 21971035 ~ 21982521 (-) True AMCG00005363
TU185101 other upstream 1507007 22030825 ~ 22035272 (-) False AMCG00005362
TU185105 other upstream 1512777 22036595 ~ 22101862 (-) True G147109

Expression Profile