RNA id: TU184408


Basic Information

Item Value
RNA id TU184408
length 833
lncRNA type inter_gene
GC content 0.56
exon number 1
gene id G146578
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 20534368 ~ 20535200 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCATCTCCAGTCTCAGGTCCCTGATCTTCTCCGACAGCCCTTTCTTCCCCAGGTCCGGGTCCTGCCGCTCGGCTGTGCTTGACCTGCTCTCCGCCAGCTGCGCCCCGGGGTCCCTCATCCACCTCAGCAGCCCCTCCGGGGTTTTGCGACCAATCTTAGTCTCCAGGTCTTTCAGATCCGGCAAGGACTCGCTCACACTGCTGTCCTCCATCTCCTTCCTCGTCTGGTGTTAATATATTATGTGAATAGTGAAAAAAACGCTTGCAATGCGGGTACAGAAGGCAGGCACTAACTGCGGTGATGGTAGCTAtatcattttacaaatatagCTTTAGCTTCTGACGCGTTTGCATCAATCTAGGATTAAAGAAAAGTTCAATTAAAAGCCCCAATCCCCCTGCTGCCAGTATCCCGCATGAGCCGCACTGGCGCTAGCAGCGGCTGCGGGTCCGGATCCTGCACAGCCCGACGAGCGACTCCTCTTGCCCGGGCTGTTGCCGATGACTCCCCATGTCCACTTTCTAGTCATTTATTGTGGGGCTGCTTTGCAAAACTGTGCAGCGCTGGGCATGGTCTGCAGCCCTCTGGGAACGAGACAGCCTTTGAGAAGCAATGCACACGCAATGCCCTATGCCCGCGGGTCTGCCGGGCTGGTATGATCCGCTAACATGACTTTCCGCCCCAAACGCAGCTCCTGGCACTTTTTCTGGTGTTTTCTGGTGTTTTCTGGTGTCACTGGCGCTCGGGTCGTCGGTGTCCGACAGCTGACATTGTTTTCTGCGATTTGCTGTGATCGCAGCAGCCCGAGTTTAGCAACGCCGCGGTGCCACCGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU184406 lncRNA downstream 10550 20521649 ~ 20523818 (-) True G146576
TU184402 lncRNA downstream 39957 20492171 ~ 20494411 (-) False AMCG00005276
TU184375 lncRNA downstream 212748 20316060 ~ 20321620 (-) True AMCG00005270
TU184317 lncRNA downstream 387014 20146085 ~ 20147354 (-) True G146503
TU184289 lncRNA downstream 424838 20108125 ~ 20109530 (-) True G146487
TU184451 lncRNA upstream 64039 20599239 ~ 20599503 (-) True G146607
TU184453 lncRNA upstream 64974 20600174 ~ 20600514 (-) True G146609
TU184476 lncRNA upstream 98924 20634124 ~ 20636209 (-) True G146623
TU184485 lncRNA upstream 159615 20694815 ~ 20707606 (-) True G146631
TU184511 lncRNA upstream 221756 20756956 ~ 20757321 (-) True G146652
AMCG00005277 mRNA downstream 9067 20524046 ~ 20525301 (-) True AMCG00005277
AMCG00005276 mRNA downstream 32162 20491051 ~ 20502206 (-) True AMCG00005276
AMCG00005271 mRNA downstream 142807 20370668 ~ 20391561 (-) True AMCG00005271
AMCG00005270 mRNA downstream 195203 20320591 ~ 20339165 (-) False AMCG00005270
AMCG00005266 mRNA downstream 347931 20182380 ~ 20186437 (-) True AMCG00005266
AMCG00005275 mRNA upstream 6902 20542102 ~ 20547367 (-) True AMCG00005275
AMCG00005294 mRNA upstream 104458 20639658 ~ 20643224 (-) True AMCG00005294
AMCG00005295 mRNA upstream 112356 20647556 ~ 20677947 (-) True AMCG00005295
AMCG00005293 mRNA upstream 173586 20708786 ~ 20709969 (-) True AMCG00005293
AMCG00005291 mRNA upstream 188678 20723878 ~ 20735082 (-) True AMCG00005291
TU184357 other downstream 254622 20274391 ~ 20279746 (-) True G146532
TU184245 other downstream 510861 20020710 ~ 20023507 (-) False AMCG00005256
TU184246 other downstream 510861 20020710 ~ 20023507 (-) False AMCG00005256
TU184128 other downstream 772922 19758232 ~ 19761446 (-) True AMCG00005240
TU184064 other downstream 961050 19570059 ~ 19573318 (-) True G146313
TU184470 other upstream 74154 20609354 ~ 20610643 (-) True G146618
TU184860 other upstream 1209676 21744876 ~ 21745453 (-) True G146938
TU185079 other upstream 1435835 21971035 ~ 21982521 (-) True AMCG00005363
TU185101 other upstream 1495625 22030825 ~ 22035272 (-) False AMCG00005362
TU185105 other upstream 1501395 22036595 ~ 22101862 (-) True G147109

Expression Profile