RNA id: TU184428


Basic Information

Item Value
RNA id TU184428
length 290
lncRNA type sense_over
GC content 0.54
exon number 2
gene id G146591
representative False

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 20642772 ~ 20712220 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGGACACGAGATACACTACACACATAGGCTACAGTTACAATCTCATGACATGCGGTCCAAGCTTCACTCACCTTCTTCATTTGCAGATGCGGTTGTTTCGAGTCAAACATGAAGAGATCCCCGAAGAAGGGCAGCCCCCGCGGGCCGGGGGGGAAGTTTGTAGGAGTCCTGTTCCTGTACAGGTCGGCAAGAACCAACACAACGAAGACCAGCAGCAAAATGCCCCGGACATCCAGCAGATCCCACACAAAACCACTCGCCAGACCCATTGACCGCGCCGATTGCAGATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU184369 lncRNA upstream 309650 20316007 ~ 20333122 (+) True G146544
TU184340 lncRNA upstream 458129 20182354 ~ 20184643 (+) False G146519
TU184288 lncRNA upstream 533231 20108102 ~ 20109541 (+) True G146486
TU184248 lncRNA upstream 616711 20024173 ~ 20026061 (+) True G146450
TU184234 lncRNA upstream 631637 20007416 ~ 20011135 (+) True G146442
TU184498 lncRNA downstream 38084 20750304 ~ 20750938 (+) True G146640
TU184567 lncRNA downstream 143491 20855711 ~ 20855918 (+) True G146701
TU184569 lncRNA downstream 154986 20867206 ~ 20867406 (+) True G146703
TU184620 lncRNA downstream 351753 21063973 ~ 21064908 (+) True G146749
TU184664 lncRNA downstream 614312 21326532 ~ 21328902 (+) True G146782
AMCG00005279 mRNA upstream 14841 20597743 ~ 20627931 (+) True AMCG00005279
AMCG00005278 mRNA upstream 47018 20589746 ~ 20595754 (+) True AMCG00005278
AMCG00005274 mRNA upstream 153108 20484932 ~ 20489664 (+) True AMCG00005274
AMCG00005272 mRNA upstream 363195 20253009 ~ 20279577 (+) True AMCG00005272
AMCG00005273 mRNA upstream 433315 20208791 ~ 20209457 (+) True AMCG00005273
AMCG00005287 mRNA downstream 28958 20741178 ~ 20742301 (+) True AMCG00005287
AMCG00005288 mRNA downstream 51412 20763632 ~ 20768980 (+) True AMCG00005288
AMCG00005282 mRNA downstream 69088 20781308 ~ 20794020 (+) True AMCG00005282
AMCG00005280 mRNA downstream 85348 20797568 ~ 20803197 (+) True AMCG00005280
AMCG00005281 mRNA downstream 91401 20803621 ~ 20806381 (+) True AMCG00005281
TU184405 other upstream 117953 20521649 ~ 20524819 (+) True G146575
TU184347 other upstream 362986 20273513 ~ 20279786 (+) False AMCG00005272
TU184341 other upstream 458129 20182354 ~ 20184643 (+) True G146519
TU184056 other upstream 1062965 19579573 ~ 19579807 (+) True G146305
TU183561 other upstream 2871247 17765257 ~ 17771525 (+) True G145932
TU184526 other downstream 85238 20797458 ~ 20803180 (+) False AMCG00005280
TU184679 other downstream 625212 21337432 ~ 21340712 (+) True G146790
TU184762 other downstream 858310 21570530 ~ 21572321 (+) True AMCG00005329
TU184830 other downstream 968488 21680708 ~ 21704394 (+) True AMCG00005340
TU184875 other downstream 1099512 21811732 ~ 21848136 (+) True G146952

Expression Profile