RNA id: TU184511


Basic Information

Item Value
RNA id TU184511
length 366
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G146652
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 20756956 ~ 20757321 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGGGAACTGTAGGCAGAGAGAGGTTGTTGAGGACTGGTggagggggaagaaaataagAGGGAGAACTGTCTCTTTGAATTGACTGTTCTGGAACAGGTTTGGTGTCAGAGGTTTACAGTGTGGATGATGTTTGTTAACAAATAGTCAACACTGCTGTTGACAGGAGAGCTGGATGGCATGGGGTGTGagtctgttgtgttgtgttgtgttgtgtttgctaaaatattgattgtattaGTGAGTGGGATTGTGGTGCGCATCAGAAGAAGCATTGCTTGGAAgcgtttttagttgtttttttgtttattactcAGATGTCTAAGAACATAACGTcacactgcattaaaaatacatgaacaagAGACT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU184485 lncRNA downstream 49350 20694815 ~ 20707606 (-) True G146631
TU184476 lncRNA downstream 120747 20634124 ~ 20636209 (-) True G146623
TU184453 lncRNA downstream 156442 20600174 ~ 20600514 (-) True G146609
TU184451 lncRNA downstream 157453 20599239 ~ 20599503 (-) True G146607
TU184408 lncRNA downstream 221756 20534368 ~ 20535200 (-) True G146578
TU184568 lncRNA upstream 100279 20857600 ~ 20857802 (-) True G146702
TU184704 lncRNA upstream 623985 21381306 ~ 21381569 (-) True G146813
TU184738 lncRNA upstream 728628 21485949 ~ 21487711 (-) True AMCG00005333
TU184761 lncRNA upstream 802728 21560049 ~ 21561461 (-) True G146857
TU184798 lncRNA upstream 832675 21589996 ~ 21606535 (-) True G146891
AMCG00005292 mRNA downstream 1462 20752234 ~ 20755494 (-) True AMCG00005292
AMCG00005296 mRNA downstream 5057 20746440 ~ 20751899 (-) True AMCG00005296
AMCG00005291 mRNA downstream 21874 20723878 ~ 20735082 (-) True AMCG00005291
AMCG00005293 mRNA downstream 46987 20708786 ~ 20709969 (-) True AMCG00005293
AMCG00005295 mRNA downstream 79009 20647556 ~ 20677947 (-) True AMCG00005295
AMCG00005290 mRNA upstream 70 20757391 ~ 20760830 (-) True AMCG00005290
AMCG00005289 mRNA upstream 11715 20769036 ~ 20780518 (-) True AMCG00005289
AMCG00005285 mRNA upstream 57522 20814843 ~ 20849602 (-) True AMCG00005285
AMCG00005305 mRNA upstream 225545 20982866 ~ 20999934 (-) True AMCG00005305
AMCG00005304 mRNA upstream 277471 21034792 ~ 21049355 (-) True AMCG00005304
TU184470 other downstream 146313 20609354 ~ 20610643 (-) True G146618
TU184357 other downstream 477210 20274391 ~ 20279746 (-) True G146532
TU184245 other downstream 733449 20020710 ~ 20023507 (-) False AMCG00005256
TU184246 other downstream 733449 20020710 ~ 20023507 (-) False AMCG00005256
TU184128 other downstream 995510 19758232 ~ 19761446 (-) True AMCG00005240
TU184860 other upstream 987555 21744876 ~ 21745453 (-) True G146938
TU185079 other upstream 1213714 21971035 ~ 21982521 (-) True AMCG00005363
TU185101 other upstream 1273504 22030825 ~ 22035272 (-) False AMCG00005362
TU185105 other upstream 1279274 22036595 ~ 22101862 (-) True G147109
TU185104 other upstream 1326396 22083717 ~ 22084944 (-) True G147108

Expression Profile