RNA id: TU184664


Basic Information

Item Value
RNA id TU184664
length 2344
lncRNA type inter_gene
GC content 0.48
exon number 2
gene id G146782
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 21326532 ~ 21328902 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AATTCTGAATTTTGAAAcatgtgaaaaaaaattaaatgctttgttttgtgctcTGGAAGAGTCTATTGAAGTTTAAAACGCATTAAATGCCAGGAATATGTGGGTCAGGTTCTGCCTCATGCTCGTTACAATTTATAgtgtaaattgtaatgttttgtaaacatagcacacattattattattattattattattatttatttcttggcagacacccttatccagggcgacttaccaAACATAAGCgcaatgcaaagtgcaaaaatacagttcagtacaaggcatcaaacattacaaattcagattttcaaaatacagtgcaattcaaagcataatacattgtacacattccaatttacacaagtgtatacaataaatgaggtcttacatcctggatagtaagatgttaggtcacagtcaagggctacgggaaagggagcaaaggggaaatcaaaataatacgagtacaattaacacaagaagcatgataaaacattgtaaagtgttatcctacaggagagtaaattgaaattaaatagttGTGTACAGCATAGTGAACACAGTGCCAGTCAGACAACGGGAGGCCCTTTGCCACTAAAAAAATCCTGATAAGAGACCCGGCTGCTTCAGGACAGCCTCGTAAAGGACAGCTTTCCTTTCCTACAACCGACAACAATCCACAGCACAGACTGTTTCTGTTTTAGCAATTACAGCCACGTGGACACCAGGTCTCAACAACAAAGACATTTCAACATCTTTCTCTTaaagaaaatgcttattttctgtacagatataattataaacaattcctttaaaaaagaCGTGGATATTACAAGCAGAGCGAACCTCAGCTTCGGTATAAATATCACAGAGTTATATTTACCAGTAACTGACTCTGTAATCACCTGAATAATTGTACAAGTGGATTTATCTCCCAGTCTGTCATTTATCTCTATTTTTACAGAATAAGCCATCCAGAATAGTATTTCAACTTCTTAAAATGAACCACCGCACAAAGTAGACTACCAGAGCGTTTTATTGTCATCTGTCTACAACCAAAAGAGGGACCGGATACAAGACTAGAATAGGATACAGGTTCTCCCAAGAGTCACATCCCAGAACAACACGGGGGAGAAACATCCCTCTAGACCAGTCTGATCTGGCTGCCACCCCCGAACCCCAGTCTATCCCCAGGGGTGACCCCAGTGGGATGGGAATCCAGGCATAAGGAGGGCAACGACAAGTTCTACAAAAAACTATCAAATCACCCATAAAACTGCTTCCACAAGAAGTAAAGCGAAGTGTATGTGAAGCCGTGCTCAACTAATACGTACAGACCACCAATAAatccccgccccccccacagcaGCACAATACAGCCGTTTTCACACGACACTATCTCCATTTTCGCCCCGGGTTCCACCGTCCCGTGCGAGAGCAGCTTATGCGTCGTCTTCTGAGGAGGAGTAGCAGTCCAGACCCAGCACGTGTGGCCTGGGTTCTGTCGGGGGTCTGGCGGCGCTCGGATCAGATCCTTCCTTCTCTCCGGGCGGGGCGTTGTGCGTTTCGACCGCCCGGGCCGCAGAGGAGCCGCGCAGGTTCGGGAGCCCCAGAAACAGGACCCTGGCCAGGCTGTCCGCGTTCTCCTCCCCAGGCCCGGCCGGGCGCCCCGTGAATTTCAGCGGCATCTTGCGGAGATCGAAGGACAGGGGCCGGTCCTggccgggccgggccggagAGACCTCTGGAGGCGGGTCCCCGGCCACGGTGCCGTCCAGGTCCGTCTCGCTGTCGGACTCTTCACCCGCCGGCTCCGCAGACTCGGACAGGATGGGAGTGAGGAGCGTCTTTACGCCTTCGCACTctgtggaggagagagagagagggggaaaaaaaaacattgatgtgTGAGGCCTagcttaaaaaaggaaaagtaaacAAGTATTAAAGGCCCTGTGTGTTATTATCACAGAGCTGTGTTTAAACTCTGGGAAAGAAGGTCTCGACTGACAGCTTTTCACTTCAGGTGTGTAGTTTTCATCATGAACACGTTTGATACGGtatgaatacaaacacaatcCCGTCAACAAAACATACtacacaacattaaaaacacaagaggCAGCCCGGAGCAGCTGCCCACACCGATACCCGTCTGGCTCCGACACCCCGACCCGTCCGTGAGCCGCCGCCTCTTGCTGTAGCCGCGCAGGGTCCAGGGCTGGTGCCTGCAGGACGGGTCCAGGGCCCGGAGTTTGCGCAGGAACCGCTTGTACTCCTGGCCCAGGTCCTCGACGTGCCGCTGGAACTCGGCGATCTTGCGCTCGGGGTAGTGAGACAGCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU184620 lncRNA upstream 261624 21063973 ~ 21064908 (+) True G146749
TU184569 lncRNA upstream 459126 20867206 ~ 20867406 (+) True G146703
TU184567 lncRNA upstream 470614 20855711 ~ 20855918 (+) True G146701
TU184498 lncRNA upstream 575594 20750304 ~ 20750938 (+) True G146640
TU184443 lncRNA upstream 588211 20682625 ~ 20738321 (+) False G146599
TU184706 lncRNA downstream 69774 21398676 ~ 21398971 (+) True G146815
TU184834 lncRNA downstream 381455 21710357 ~ 21712783 (+) True G146915
TU184849 lncRNA downstream 415977 21744879 ~ 21745451 (+) True G146928
TU184983 lncRNA downstream 619184 21948086 ~ 21948618 (+) True G147022
TU184985 lncRNA downstream 621426 21950328 ~ 21950587 (+) True G147024
AMCG00005303 mRNA upstream 267243 21050477 ~ 21059289 (+) True AMCG00005303
AMCG00005302 mRNA upstream 294539 21022204 ~ 21031993 (+) True AMCG00005302
AMCG00005284 mRNA upstream 472502 20850904 ~ 20854030 (+) True AMCG00005284
AMCG00005283 mRNA upstream 511782 20807201 ~ 20814750 (+) True AMCG00005283
AMCG00005281 mRNA upstream 520151 20803621 ~ 20806381 (+) True AMCG00005281
AMCG00005311 mRNA downstream 74572 21403474 ~ 21457237 (+) True AMCG00005311
AMCG00005325 mRNA downstream 136666 21465568 ~ 21479216 (+) True AMCG00005325
AMCG00005326 mRNA downstream 170506 21499408 ~ 21509612 (+) True AMCG00005326
AMCG00005327 mRNA downstream 200320 21529222 ~ 21540905 (+) True AMCG00005327
AMCG00005329 mRNA downstream 237736 21566638 ~ 21571522 (+) False AMCG00005329
TU184526 other upstream 523352 20797458 ~ 20803180 (+) False AMCG00005280
TU184446 other upstream 624128 20699486 ~ 20702404 (+) True AMCG00005286
TU184436 other upstream 656363 20661926 ~ 20670169 (+) True G146596
TU184405 other upstream 801713 20521649 ~ 20524819 (+) True G146575
TU184347 other upstream 1046746 20273513 ~ 20279786 (+) False AMCG00005272
TU184679 other downstream 8530 21337432 ~ 21340712 (+) True G146790
TU184762 other downstream 241628 21570530 ~ 21572321 (+) True AMCG00005329
TU184830 other downstream 351806 21680708 ~ 21704394 (+) True AMCG00005340
TU184875 other downstream 482830 21811732 ~ 21848136 (+) True G146952
TU184903 other downstream 556368 21885270 ~ 21887445 (+) False AMCG00005345

Expression Profile