RNA id: TU184834


Basic Information

Item Value
RNA id TU184834
length 1400
lncRNA type inter_gene
GC content 0.60
exon number 2
gene id G146915
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 21710357 ~ 21712783 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCCACATCTACCACTCGGCCTCGGCCCCGCCGGGGGGAGCGTCTGCATTTTTCTGACATGATAACACTGGGCTTTCCTTGTCCCGTCTGCTCACGTGCGTGGCGCGGCTGAGGCGGCGGGGGACGCAGGGTCGCGTGTTTAAAGGCCTGAAGATCTcaccggggtgggggggctgcagACTGGGGCAGCGAGAGCAGGGAATAAAGAGTCCGAGGAGCAGGGGGTATTTAAAAATAGGTTTATTTTGGTATCTAGTGGTAGTAGGAGTAGGTTGGCAGAGTTGGGCCTCAGCTCCATCTCCTGTCACGAGTGTCTGTCCTGACAGAAGGGGTTCTGGAGTGGAACAGGCTCTGGGCCTGGAAACCCAATGACAGAACTTACAGAAACACAAGACTATATCCCATTTAAATAAGGCGATAAATAATGGCGGGAGGTTGGGGGGACGGGGGTAGGTATAGGGGGTTTTGCCGAAGCTAGGCCGCCCCCCCCGAGCACACGGACAGAGCGGTCACTGCATCCCTCTGCACTGAGTGGGCGGCTTCNNGGCACTGGGCTGTGTGCGCActctgtgcaggtgtgtgtgtgcacgtgtcgGGGTCTCTCCAGGGCACTgggctgtgtgcgtgtgtcaggGTCCCTCCGGGGCGCTGGGTTGCGGTCCGTGTCCGTGTGAGCTGCTCTGCAGAGCTCAGtgtccttccctccctcctgcaGCTCCCACGGTGCACTGGGCCCAGCAGTTCTCTCGCTTCTCTGGCCCGTGACGGGTGTGGAGAAGCATCCCTAGCTTTTTCTCCCGGAATCAATGAGCCGCACAGACGGTGGTGGTGCTGAGGGTAGTGTGCCGCCTGCTGCTGTACCTGCTGGGGGGCGTCTCTCTCTaacactgctgtgctgtgagCTGCTTTCTGTCTGGACACTGTCCTCCTTCCCAGTCCTCTGGAAGGACtagagggagaggagggtggaGGGCGAGGCAGGTGAGGAAGGTGCGGCCCAGGCGATGCATCCCAAGAACTGTCatccataaacacacacactgcacacaacacacgGCACACAtatgacacactgcacacacaggcacaggcCAGTGCGGTCTCCACTGTATACACCGTGAATGTGGAGAGAGGGGGTCGGGGGTGAGTGGGGTGGGGTCAGGGCAGGGTGGGGTAGAAGCAGTGGGTGAgtccggcccggcccggcccggcctgTCCTCAGTCTATGGGCCGGATCATCATCTGCACCGCCTTCAAAGAGTAGAATCCACCCCCGTAGTCGGCCCAGAAGATGCCGTCCTGGAACTTGCTGCGGTACACCCCCCCGCTGTACCAAACCCCGTTCAGGTTAGTCTGTCCGCAGGCGTTGTACCACCAGCCGCCCTTGTGGAAATGGGCGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU184706 lncRNA upstream 311386 21398676 ~ 21398971 (+) True G146815
TU184664 lncRNA upstream 381455 21326532 ~ 21328902 (+) True G146782
TU184620 lncRNA upstream 645449 21063973 ~ 21064908 (+) True G146749
TU184569 lncRNA upstream 842951 20867206 ~ 20867406 (+) True G146703
TU184567 lncRNA upstream 854439 20855711 ~ 20855918 (+) True G146701
TU184849 lncRNA downstream 32096 21744879 ~ 21745451 (+) True G146928
TU184983 lncRNA downstream 235303 21948086 ~ 21948618 (+) True G147022
TU184985 lncRNA downstream 237545 21950328 ~ 21950587 (+) True G147024
TU184988 lncRNA downstream 243818 21956601 ~ 21957045 (+) True G147027
TU185037 lncRNA downstream 368861 22081644 ~ 22087344 (+) True G147066
AMCG00005339 mRNA upstream 1963 21707342 ~ 21708394 (+) True AMCG00005339
AMCG00005340 mRNA upstream 5839 21703179 ~ 21704518 (+) False AMCG00005340
AMCG00005322 mRNA upstream 31254 21677587 ~ 21679103 (+) True AMCG00005322
AMCG00005317 mRNA upstream 43467 21662349 ~ 21666890 (+) True AMCG00005317
AMCG00005316 mRNA upstream 57569 21641391 ~ 21652788 (+) True AMCG00005316
AMCG00005336 mRNA downstream 9797 21722580 ~ 21727870 (+) True AMCG00005336
AMCG00005337 mRNA downstream 20598 21733381 ~ 21737650 (+) True AMCG00005337
AMCG00005338 mRNA downstream 24901 21737684 ~ 21740828 (+) True AMCG00005338
AMCG00005335 mRNA downstream 43404 21756187 ~ 21757882 (+) True AMCG00005335
AMCG00005344 mRNA downstream 160244 21873027 ~ 21878534 (+) True AMCG00005344
TU184830 other upstream 5963 21680708 ~ 21704394 (+) True AMCG00005340
TU184762 other upstream 138036 21570530 ~ 21572321 (+) True AMCG00005329
TU184679 other upstream 369645 21337432 ~ 21340712 (+) True G146790
TU184526 other upstream 907177 20797458 ~ 20803180 (+) False AMCG00005280
TU184446 other upstream 1007953 20699486 ~ 20702404 (+) True AMCG00005286
TU184875 other downstream 98949 21811732 ~ 21848136 (+) True G146952
TU184903 other downstream 172487 21885270 ~ 21887445 (+) False AMCG00005345
TU184980 other downstream 232775 21945558 ~ 21947991 (+) True G147021
TU184986 other downstream 239786 21952569 ~ 21952882 (+) True G147025
TU184992 other downstream 244657 21957440 ~ 21984144 (+) True G147029

Expression Profile