RNA id: TU184849



Basic Information


Item Value
RNA id TU184849
length 573
lncRNA type inter_gene
GC content 0.54
exon number 1
gene id G146928
representative True

Chromosome Information


Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 21744879 ~ 21745451 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


CCCCCGACCGCAGTGTCTGTGTCTCGTCGTAATTATTCTtacaattattcatattataattatcaacacattattattttcatatttaacatttccTCTGTACACCCGTTTGCCTGTTCGCTCCTCTTGGGTTCAGGGTCAGAGTGGGACCCCCTCTCCGCTCTGCCCCACCCCCACGCAGTCTTTGTCTGCAGAGTTGATAGAGTTGATAGCGCCTTTCCAGCTGGAAGAACAGGGCCGCCTCCTCCCACCCCAGCCAGGGGTCCACAGTGGGCTCTGGACGTCTCCCACAGAGTGTGCGTGGAGACAACACACCAAGCGTCTCTGAACCGGGCCAGTGCCGAGGAGAGCCGGGCTTCACGGCTCATGTCTACTCTCCGTCAAGACCAGACGGGCAAAGTCCAGTTTTGTCTTCCGTCTCTGGCGCTCTGTGGACATTAATGGGGGGTTTCAGCCCAGAAATCAATGTCCATtggtcctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtaagggaAGCTTGGGGTCTCTGCAGTTCCTGCTCCCTCCCCAACTTGGTGCCCCTTgcttct

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU184834 lncRNA upstream 32096 21710357 ~ 21712783 (+) True G146915
TU184706 lncRNA upstream 345908 21398676 ~ 21398971 (+) True G146815
TU184664 lncRNA upstream 415977 21326532 ~ 21328902 (+) True G146782
TU184620 lncRNA upstream 679971 21063973 ~ 21064908 (+) True G146749
TU184569 lncRNA upstream 877473 20867206 ~ 20867406 (+) True G146703
TU184983 lncRNA downstream 202635 21948086 ~ 21948618 (+) True G147022
TU184985 lncRNA downstream 204877 21950328 ~ 21950587 (+) True G147024
TU184988 lncRNA downstream 211150 21956601 ~ 21957045 (+) True G147027
TU185037 lncRNA downstream 336193 22081644 ~ 22087344 (+) True G147066
AMCG00005338 mRNA upstream 4051 21737684 ~ 21740828 (+) True AMCG00005338
AMCG00005337 mRNA upstream 7229 21733381 ~ 21737650 (+) True AMCG00005337
AMCG00005336 mRNA upstream 17009 21722580 ~ 21727870 (+) True AMCG00005336
AMCG00005339 mRNA upstream 36485 21707342 ~ 21708394 (+) True AMCG00005339
AMCG00005340 mRNA upstream 40361 21703179 ~ 21704518 (+) False AMCG00005340
AMCG00005335 mRNA downstream 10736 21756187 ~ 21757882 (+) True AMCG00005335
AMCG00005344 mRNA downstream 127576 21873027 ~ 21878534 (+) True AMCG00005344
AMCG00005345 mRNA downstream 137748 21883199 ~ 21887568 (+) True AMCG00005345
AMCG00005349 mRNA downstream 171664 21917115 ~ 21919897 (+) True AMCG00005349
AMCG00005348 mRNA downstream 175433 21920884 ~ 21928473 (+) True AMCG00005348
TU184830 other upstream 40485 21680708 ~ 21704394 (+) True AMCG00005340
TU184762 other upstream 172558 21570530 ~ 21572321 (+) True AMCG00005329
TU184679 other upstream 404167 21337432 ~ 21340712 (+) True G146790
TU184526 other upstream 941699 20797458 ~ 20803180 (+) False AMCG00005280
TU184446 other upstream 1042475 20699486 ~ 20702404 (+) True AMCG00005286
TU184875 other downstream 66281 21811732 ~ 21848136 (+) True G146952
TU184903 other downstream 139819 21885270 ~ 21887445 (+) False AMCG00005345
TU184980 other downstream 200107 21945558 ~ 21947991 (+) True G147021
TU184986 other downstream 207118 21952569 ~ 21952882 (+) True G147025
TU184992 other downstream 211989 21957440 ~ 21984144 (+) True G147029

Expression Profile