RNA id: TU184860


Basic Information

Item Value
RNA id TU184860
length 578
RNA type TUCP
GC content 0.54
exon number 1
gene id G146938
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 21744876 ~ 21745453 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

acagaagcAAGGGGCACCAAGTTGGGGAGGGAGCAGGAACTGCAGAGACCCCAAGCTtcccttacacacacacacacacacacacacacacacacaggaccaATGGACATTGATTTCTGGGCTGAAACCCCCCATTAATGTCCACAGAGCGCCAGAGACGGAAGACAAAACTGGACTTTGCCCGTCTGGTCTTGACGGAGAGTAGACATGAGCCGTGAAGCCCGGCTCTCCTCGGCACTGGCCCGGTTCAGAGACGCTTGGTGTGTTGTCTCCACGCACACTCTGTGGGAGACGTCCAGAGCCCACTGTGGACCCCTGGCTGGGGTGGGAGGAGGCGGCCCTGTTCTTCCAGCTGGAAAGGCGCTATCAACTCTATCAACTCTGCAGACAAAGACTGCGTGGGGGTGGGGCAGAGCGGAGAGGGGGTCCCACTCTGACCCTGAACCCAAGAGGAGCGAACAGGCAAACGGGTGTACAGAggaaatgttaaatatgaaaataataatgtgttgataattataatatgaataattgtaAGAATAATTACGACGAGACACAGACACTGCGGTCGGGGGGCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU184798 lncRNA downstream 138341 21589996 ~ 21606535 (-) True G146891
TU184761 lncRNA downstream 183415 21560049 ~ 21561461 (-) True G146857
TU184738 lncRNA downstream 257165 21485949 ~ 21487711 (-) True AMCG00005333
TU184704 lncRNA downstream 363307 21381306 ~ 21381569 (-) True G146813
TU184568 lncRNA downstream 887074 20857600 ~ 20857802 (-) True G146702
TU184859 lncRNA upstream 91 21745544 ~ 21745808 (-) False AMCG00005343
TU184873 lncRNA upstream 61527 21806980 ~ 21807306 (-) True G146951
TU185082 lncRNA upstream 236605 21982058 ~ 21982521 (-) False AMCG00005363
TU185126 lncRNA upstream 386813 22132266 ~ 22180932 (-) True G147122
TU185169 lncRNA upstream 483746 22229199 ~ 22229991 (-) True G147156
AMCG00005342 mRNA downstream 978 21740519 ~ 21743898 (-) True AMCG00005342
AMCG00005341 mRNA downstream 27415 21710505 ~ 21717461 (-) True AMCG00005341
AMCG00005323 mRNA downstream 64393 21677408 ~ 21680483 (-) True AMCG00005323
AMCG00005320 mRNA downstream 69040 21668543 ~ 21675836 (-) True AMCG00005320
AMCG00005321 mRNA downstream 76608 21668089 ~ 21668268 (-) True AMCG00005321
AMCG00005343 mRNA upstream 121 21745574 ~ 21747798 (-) True AMCG00005343
AMCG00005347 mRNA upstream 93373 21838826 ~ 21841316 (-) True AMCG00005347
AMCG00005346 mRNA upstream 99591 21845044 ~ 21861431 (-) True AMCG00005346
AMCG00005355 mRNA upstream 145861 21891314 ~ 21910286 (-) True AMCG00005355
AMCG00005354 mRNA upstream 166426 21911879 ~ 21916299 (-) True AMCG00005354
TU184470 other downstream 1134233 20609354 ~ 20610643 (-) True G146618
TU184357 other downstream 1465130 20274391 ~ 20279746 (-) True G146532
TU184245 other downstream 1721369 20020710 ~ 20023507 (-) False AMCG00005256
TU184246 other downstream 1721369 20020710 ~ 20023507 (-) False AMCG00005256
TU184128 other downstream 1983430 19758232 ~ 19761446 (-) True AMCG00005240
TU185079 other upstream 225582 21971035 ~ 21982521 (-) True AMCG00005363
TU185101 other upstream 285372 22030825 ~ 22035272 (-) False AMCG00005362
TU185105 other upstream 291142 22036595 ~ 22101862 (-) True G147109
TU185104 other upstream 338264 22083717 ~ 22084944 (-) True G147108
TU185123 other upstream 382454 22127907 ~ 22130549 (-) True G147121

Expression Profile