RNA id: TU184873


Basic Information

Item Value
RNA id TU184873
length 327
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G146951
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 21806980 ~ 21807306 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

caaacaatgtggggaagcaataaaaaaggcaaacacaatgctagggtatattgtcaaaagtgtagaattgagcacaagggcagtgatgttcagactgtacaatgcactagttagagctcatctggatactgtggacagttctgggctccacacttcaagaaagatatcgctgctctagaggcagttcagaggagagcaaccagacttattccaggtctgaagggaatgtcctactgagagactgaggacctgaaccttttcaccctggaacagaggagactacgtggggacttgatccaagtcttcacaatcatgaaaggcatcgag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU184859 lncRNA downstream 61172 21745544 ~ 21745808 (-) False AMCG00005343
TU184798 lncRNA downstream 200445 21589996 ~ 21606535 (-) True G146891
TU184761 lncRNA downstream 245519 21560049 ~ 21561461 (-) True G146857
TU184738 lncRNA downstream 319269 21485949 ~ 21487711 (-) True AMCG00005333
TU184704 lncRNA downstream 425411 21381306 ~ 21381569 (-) True G146813
TU185082 lncRNA upstream 174752 21982058 ~ 21982521 (-) False AMCG00005363
TU185126 lncRNA upstream 324960 22132266 ~ 22180932 (-) True G147122
TU185169 lncRNA upstream 421893 22229199 ~ 22229991 (-) True G147156
TU185197 lncRNA upstream 615683 22422989 ~ 22423230 (-) True G147184
TU185198 lncRNA upstream 618419 22425725 ~ 22426106 (-) True G147185
AMCG00005343 mRNA downstream 59182 21745574 ~ 21747798 (-) True AMCG00005343
AMCG00005342 mRNA downstream 63082 21740519 ~ 21743898 (-) True AMCG00005342
AMCG00005341 mRNA downstream 89519 21710505 ~ 21717461 (-) True AMCG00005341
AMCG00005323 mRNA downstream 126497 21677408 ~ 21680483 (-) True AMCG00005323
AMCG00005320 mRNA downstream 131144 21668543 ~ 21675836 (-) True AMCG00005320
AMCG00005347 mRNA upstream 31520 21838826 ~ 21841316 (-) True AMCG00005347
AMCG00005346 mRNA upstream 37738 21845044 ~ 21861431 (-) True AMCG00005346
AMCG00005355 mRNA upstream 84008 21891314 ~ 21910286 (-) True AMCG00005355
AMCG00005354 mRNA upstream 104573 21911879 ~ 21916299 (-) True AMCG00005354
AMCG00005353 mRNA upstream 130142 21937448 ~ 21956941 (-) True AMCG00005353
TU184860 other downstream 61527 21744876 ~ 21745453 (-) True G146938
TU184470 other downstream 1196337 20609354 ~ 20610643 (-) True G146618
TU184357 other downstream 1527234 20274391 ~ 20279746 (-) True G146532
TU184245 other downstream 1783473 20020710 ~ 20023507 (-) False AMCG00005256
TU185079 other upstream 163729 21971035 ~ 21982521 (-) True AMCG00005363
TU185101 other upstream 223519 22030825 ~ 22035272 (-) False AMCG00005362
TU185105 other upstream 229289 22036595 ~ 22101862 (-) True G147109
TU185104 other upstream 276411 22083717 ~ 22084944 (-) True G147108
TU185123 other upstream 320601 22127907 ~ 22130549 (-) True G147121

Expression Profile