RNA id: TU184980


Basic Information

Item Value
RNA id TU184980
length 2398
RNA type TUCP
GC content 0.73
exon number 2
gene id G147021
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 21945558 ~ 21947991 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCCGGCGCTCGCCCTTGCCTCCTGGATAGCCCCGGCCAGGTTTGGGCCCGTTGCCGCGGCGGTTCTGCCGGTCCACGGGCCGCTGGCTGGAGAAGCTCCTCTTGGACGCGGTCCCCGCTTCCCTCTTGGGCGTGACCCCCGCCTCGGCGCTGCCCTTGCTGGGTGTGGTGGAGCCGGGGGCCGCAGGGACCAGCGGCTCGGGGACGCCCTTCCTGTCCTGGCGCTCGCGGCGCTCGTTGAAGTCGCTGCTCTCGGAGGCCGTCTCCCACTCCTCGTTGGCCTGGTCGGACGAGTTCTGGTTGGACAGGTCGGGGGACTTGCTGCCCGCCGCCGCCGCGCCGGACGAGCCGGCCTCCGATggaccccctccccccccctcgCTGGCCCCCGCCCCCTCGGCCAGTGCGACGCTCCCCGCTGTCACCTTGGAGACATACGGCACTGCCACCGGGCCGGGAGCTGCCGCAGCGGTCACCGTGGCTGCCTCGCCCGCCTTGACCGCCGCCTCGCGCTCCTTCAGCCGGCGGAAGCGCGGGGGCTTGTCCTGCCGGGGGGGCCGCGCAGGCCGGGGCCTCCTGGGGCGCTCCCGGCTGCCAGCCCCACCTTCACCGTACTTCTTGCCGTCGAACTTGGGGGGGCGACGATCGGCAGGAAGAGGGCCGTCCAGCCTGGAAGCGTCAGCGTCCTCGGGCCGGAACGTCTCCATGGGCTCGGAGGGCCACTGCGAGTTCTCCTTTGGGCCCCCCCGCCGCAGAGGGACGGGCCGTGGGGGGCCGCGCTCACGACCGCCCCCACGCCGGTTGAAGATGCCCCCCCTGCCGCGCCGCGCCGGCTCACCCTTGGCCAGGAAACCAGGTTTGGGCCGGCCCTCCTCGTCGCGGGGGCCGAGCTTGTCGGGGAGCCCAAAGGATGGAGCCACTCCCGTGGCTGGCTTGGCCCCCCGGCGGGCAGCGCCCACTCCCTCCCTGCGCACCGGCCTGCCAGGCTTGGCACTGCCCTCGCGGTCGGAGGCGCCGGTGTCGCTGGCGGAGGCGCGGCCCTCACTGTCAGAGTCCGAGTCCGAGCCGCGACGCCGCCGACGCTTGGGCATGACCTCGAAGTCCGAGCTCTCGCTGCGCGTCTCGCTCTCCTCCCGCCGCCGGAACCCCGGGGCCCCTGCCGCCAGGGGCAGGTCTGCGCGGGACCGTGGCTCCCTGTATGGATAATCTCCACGACTCCGGCCCCGGCCGCCCCTGCTGCGCCCGCCGTACGTGCCACGGTAGCTGCGTCCGCGGGAGTAGTACTCTCCACGCCCACGTCCCCGGAAGCTCAAGTCAGTGGCCCATTCCCTCTCCCTATCCCTATCCCTGTCTCGGTTGTCTCTGTTGTCCCTGTCTCGGTTGTCTCGGTTGTCCCGGTCTCGGTTGTCCCGGTCTCGGTTGTCTCGGTTGTCCCTGTCTCGGTTGTCCCGGTCTCTGTCCCGGTCTCTGTCCCGGTCTCTGTCCCGGTCTCGGTCCCGCTCATCCCGCCGGTAGGCCCGGGGGGGCAGGTTGGGCTCCTTCCTGGAGGGCAGTTTAGGCTCGGGATGGGTCTTCTCTCCCGACGGCTTCTCGGGCTTGTCGTCTCTGGTGGCGGGTGTGAGTAACCCTGGCCCCTGGGGCCCCCTGCTCTTCCCTGGGGGGGCGTTCTGTGGGTCCACGGGCTCGGGGGCAGGGGGctccctcctccccccctcACCAGGGGACTTGAGGCCATCGACAGGGGGGGGCTTGGTGGCGCTCTTGCCACGGTCTGCGCCGCGCTCCTGCCGCTCCTCCCGCTCGCGCCGCTGCTCACGCTCCTCCTTCATGTCCCGCAGCACCGGCTTCTTCACTGGCCCCGAGCGCCGCACCGGCCCCTCCCTGCGGCTCAGGCCCTGGCGGGGGCCCCAGCGCGTCTCCGGCTTGGGTTTGGGGACCAGCGGCGCGGGCAGCTTGTCTGTCTTGTGCGGGCCCTCGGCCGGGGGGGTGGccctgctgctgccgctggAGGAGGGGCCCTGGGAGAAGGACTCTTTCCTGGGCTTGTCTTCGGGGCGCTCGACTGCCTCCAGGAGCCCCGGCACGGGGCCAGCCTGTTCAAAGTGTGGCTCCTCCGGCACGTGGGCGTGTTCCTGGGAGACGCTGCGCTGCTGCGGGGCCGGGCCCGGGCTCTCCGCCTCCTCCCCGCAGGACAACCCGGCCTCCTGCGGCTCGAACGTCGCCGGCCCCAGGCCCCTGTCGCCTGGCAGCAGCCCTGGCACCTCCTCAGACCCCCGGCTGTGGAAGCCTGGCCCCGGGTCTGTGGCATCTCTGAAGAAGTCGGTCTTGGCGCGGGGTTCGAGGAGGCCGGGGTCCGGGGGGTACACAGTCCTGTCCAGCTCAAGCCCCGAGTCCAGCCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU184849 lncRNA upstream 200107 21744879 ~ 21745451 (+) True G146928
TU184834 lncRNA upstream 232775 21710357 ~ 21712783 (+) True G146915
TU184706 lncRNA upstream 546587 21398676 ~ 21398971 (+) True G146815
TU184664 lncRNA upstream 616656 21326532 ~ 21328902 (+) True G146782
TU184620 lncRNA upstream 880650 21063973 ~ 21064908 (+) True G146749
TU184983 lncRNA downstream 95 21948086 ~ 21948618 (+) True G147022
TU184985 lncRNA downstream 2337 21950328 ~ 21950587 (+) True G147024
TU184988 lncRNA downstream 8610 21956601 ~ 21957045 (+) True G147027
TU185037 lncRNA downstream 133653 22081644 ~ 22087344 (+) True G147066
AMCG00005350 mRNA upstream 8231 21932366 ~ 21937327 (+) True AMCG00005350
AMCG00005348 mRNA upstream 17085 21920884 ~ 21928473 (+) True AMCG00005348
AMCG00005349 mRNA upstream 25661 21917115 ~ 21919897 (+) True AMCG00005349
AMCG00005345 mRNA upstream 57990 21883199 ~ 21887568 (+) True AMCG00005345
AMCG00005344 mRNA upstream 67024 21873027 ~ 21878534 (+) True AMCG00005344
AMCG00005351 mRNA downstream 18867 21966858 ~ 21969666 (+) True AMCG00005351
AMCG00005356 mRNA downstream 72871 22020862 ~ 22024488 (+) True AMCG00005356
AMCG00005358 mRNA downstream 76532 22024523 ~ 22031098 (+) True AMCG00005358
AMCG00005357 mRNA downstream 112218 22060209 ~ 22061467 (+) True AMCG00005357
AMCG00005364 mRNA downstream 168498 22116489 ~ 22122971 (+) True AMCG00005364
TU184903 other upstream 58113 21885270 ~ 21887445 (+) False AMCG00005345
TU184875 other upstream 97422 21811732 ~ 21848136 (+) True G146952
TU184830 other upstream 241164 21680708 ~ 21704394 (+) True AMCG00005340
TU184762 other upstream 373237 21570530 ~ 21572321 (+) True AMCG00005329
TU184679 other upstream 604846 21337432 ~ 21340712 (+) True G146790
TU184986 other downstream 4578 21952569 ~ 21952882 (+) True G147025
TU184992 other downstream 9449 21957440 ~ 21984144 (+) True G147029
TU184996 other downstream 20311 21968302 ~ 21969692 (+) False AMCG00005351
TU185050 other downstream 191196 22139187 ~ 22144833 (+) False AMCG00005365
TU185051 other downstream 191196 22139187 ~ 22144833 (+) False AMCG00005365

Expression Profile