RNA id: TU185104


Basic Information

Item Value
RNA id TU185104
length 1206
RNA type TUCP
GC content 0.54
exon number 2
gene id G147108
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 22083717 ~ 22084944 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

NNNcacacaaagacagacagacacacagacagacagacagtagtCCACTGTTGACAAtaagggttgtgtgtgtgtgtttgtgtcatctGTAGAGTAGGGGCTCAAGCTGAGACACACCAGGGCACAGGAGCCACGACCTTTTGACCTTTAACCTTCAACCTCTGACGGGCCGTTTCTACAACAGAAGCAAATGGGAAACAAccgaaaagaaaaacaaacaaaattatatatatatatatatatatatatatacatacatatatatatatacacacacatatacatacatacacacacatatatatatatcaaataaaaaatatatatattaaaagacgAATCCAGGTACTCCGAAGGCAAAAGTCCAGAGATTGAAAAGCTGTCCCCTCAGGGTCACTCGGGGTCGAATCAGAGTCAGTAGTGTTCATCAGGGGCCTGTCCATGGAGAGGACGAGTGCAGTCCGggtccccctccctctcctctctctcccactccttTCCCTCCGTCTGTCCGTAATTGcacctccccccctcctctcggGAGGCAAAGAACGCGGAAGCAGCAGAGCAAACGAGTGCAGGCTTGTCCTCCGCTCTCCCTCTGCGCTCGCTCTCTCGTTCGCTCATTCTGTGCATCTCCGCTTCCCTGGCAGACGTCACCCGGATGGAGCGATGGAGGCGGGTGCGAACGGAGGGCTCGGGGTGGCCTGCCTCCTCCCCAGTGTCTGTTCTCCTCCCGTCCTCAGTGAGCGAGGGAGGATTGGAGGGATCCAGTGTGGGCATCTCGGCTGGCTGTTCCTCCCTCTCGGTGCTGCTGCttaaagggagagagggggagggagagagagagagagagctggggtTGGCACAGGGACAGTCTGGTAGAagactctctcgctctctctctctctctgcaggcccatttcctccccctcctcctgccttccatctctctctccgtctctccagCAGAGCAGGGCAGGGTGGTCAGCAGtgcagtctgtctctctgtccgtccatccgtctctctctctctgtgtctgtgtgtgtgtctcccgCACTTCTCTTGACTCGGTTTCTGCGATGGATGGGGGGGCAGGAtggcagaggaggagggagctgggggagggggagggagctggGGTGTGGGTCGGGGGCCACTGTGCTATGTcacatcctcctcttcctcggaGCAGTAGTCTCgac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU185082 lncRNA downstream 101196 21982058 ~ 21982521 (-) False AMCG00005363
TU184873 lncRNA downstream 276411 21806980 ~ 21807306 (-) True G146951
TU184859 lncRNA downstream 337909 21745544 ~ 21745808 (-) False AMCG00005343
TU184798 lncRNA downstream 477182 21589996 ~ 21606535 (-) True G146891
TU184761 lncRNA downstream 522256 21560049 ~ 21561461 (-) True G146857
TU185126 lncRNA upstream 47322 22132266 ~ 22180932 (-) True G147122
TU185169 lncRNA upstream 144255 22229199 ~ 22229991 (-) True G147156
TU185197 lncRNA upstream 338045 22422989 ~ 22423230 (-) True G147184
TU185198 lncRNA upstream 340781 22425725 ~ 22426106 (-) True G147185
AMCG00005360 mRNA downstream 4890 22061733 ~ 22078827 (-) True AMCG00005360
AMCG00005362 mRNA downstream 28750 22032936 ~ 22054967 (-) True AMCG00005362
AMCG00005361 mRNA downstream 88202 21982801 ~ 21995515 (-) True AMCG00005361
AMCG00005363 mRNA downstream 111261 21971423 ~ 21972456 (-) False AMCG00005363
AMCG00005352 mRNA downstream 123216 21959594 ~ 21960501 (-) True AMCG00005352
AMCG00005359 mRNA upstream 1350 22086294 ~ 22087753 (-) True AMCG00005359
AMCG00005367 mRNA upstream 19198 22104142 ~ 22112254 (-) True AMCG00005367
AMCG00005369 mRNA upstream 60842 22145786 ~ 22146079 (-) True AMCG00005369
AMCG00005368 mRNA upstream 62103 22147047 ~ 22158405 (-) True AMCG00005368
AMCG00005382 mRNA upstream 131015 22215959 ~ 22223377 (-) True AMCG00005382
TU185101 other downstream 48445 22030825 ~ 22035272 (-) False AMCG00005362
TU185079 other downstream 101196 21971035 ~ 21982521 (-) True AMCG00005363
TU184860 other downstream 338264 21744876 ~ 21745453 (-) True G146938
TU184470 other downstream 1473074 20609354 ~ 20610643 (-) True G146618
TU184357 other downstream 1803971 20274391 ~ 20279746 (-) True G146532
TU185123 other upstream 42963 22127907 ~ 22130549 (-) True G147121
TU185128 other upstream 60757 22145701 ~ 22158415 (-) True G147124
TU185150 other upstream 110422 22195366 ~ 22198768 (-) True G147143

Expression Profile