RNA id: TU185126



Basic Information


Item Value
RNA id TU185126
length 540
lncRNA type read_through
GC content 0.65
exon number 2
gene id G147122
representative True

Chromosome Information


Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 22132266 ~ 22180932 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


gtggtgggggggggcgGCACATTCCAGTGAGGGGGGGCTCCACAGGCGTGGAGTGGATGGCGGACAGGCAGGCGAGGTGAGGCTCACAGCGCGCCCCCCTACCAGTGGAGCCCAGCACCCCCCCGCAACTACTGCCCTCCCCGACGAGGCCCCCCGTAGGGACAGCCTGAGCGTCAGGGGGGGCGGCGGTGAGGGACAGGTACAGCAGACACGGCAGCAGCAGGGAGCGATCCCCAGCCATGGTGACCTGAGGGAGTCCGCTCCGGTCCAAGAAGCACCGATGGAGAGGCAGTGGGACCCCTGGAAGCCCTTCGCTCTGGAGTCTAGTGTCTCGGCACCAAGTGTCCCGTCTTCAGTGTGTGCGTGAGTCTGAGAGACACGAGTGAGAGAGACAGTCTGAGAAACGAttctgagagagagtgagagagagagacagttcaGAAAGCTGGGGGGGCGGGCCGCAGGAGCACACAGCCAAGACACGGCTGAACAAGGCTACTCCCTGCGTGTTGTTTTCCCAGTTAGCGCCCCTCACCCCCC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU185082 lncRNA downstream 149745 21982058 ~ 21982521 (-) False AMCG00005363
TU184873 lncRNA downstream 324960 21806980 ~ 21807306 (-) True G146951
TU184859 lncRNA downstream 386458 21745544 ~ 21745808 (-) False AMCG00005343
TU184798 lncRNA downstream 525731 21589996 ~ 21606535 (-) True G146891
TU184761 lncRNA downstream 570805 21560049 ~ 21561461 (-) True G146857
TU185169 lncRNA upstream 48267 22229199 ~ 22229991 (-) True G147156
TU185197 lncRNA upstream 242057 22422989 ~ 22423230 (-) True G147184
TU185198 lncRNA upstream 244793 22425725 ~ 22426106 (-) True G147185
AMCG00005367 mRNA downstream 20012 22104142 ~ 22112254 (-) True AMCG00005367
AMCG00005359 mRNA downstream 44513 22086294 ~ 22087753 (-) True AMCG00005359
AMCG00005360 mRNA downstream 53439 22061733 ~ 22078827 (-) True AMCG00005360
AMCG00005362 mRNA downstream 77299 22032936 ~ 22054967 (-) True AMCG00005362
AMCG00005361 mRNA downstream 136751 21982801 ~ 21995515 (-) True AMCG00005361
AMCG00005382 mRNA upstream 35027 22215959 ~ 22223377 (-) True AMCG00005382
AMCG00005374 mRNA upstream 182662 22363594 ~ 22368062 (-) True AMCG00005374
AMCG00005375 mRNA upstream 213382 22394314 ~ 22395422 (-) True AMCG00005375
AMCG00005373 mRNA upstream 235988 22416920 ~ 22422016 (-) True AMCG00005373
TU185123 other downstream 1717 22127907 ~ 22130549 (-) True G147121
TU185105 other downstream 30404 22036595 ~ 22101862 (-) True G147109
TU185104 other downstream 47322 22083717 ~ 22084944 (-) True G147108
TU185101 other downstream 96994 22030825 ~ 22035272 (-) False AMCG00005362
TU185079 other downstream 149745 21971035 ~ 21982521 (-) True AMCG00005363
TU185150 other upstream 14434 22195366 ~ 22198768 (-) True G147143

Expression Profile