RNA id: TU185150


Basic Information

Item Value
RNA id TU185150
length 3186
RNA type TUCP
GC content 0.57
exon number 2
gene id G147143
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 22195366 ~ 22198768 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tggtatgaaaaaaaaaagactttatTCGTTTTCATTCATctatcttttttatatataaaagtaaacGTTTTCTTTAAAATCTTGTAAAGGAGACCCTTCTGTGAGGCGAGAGAATGATAAACTACTTCATATAACATGAACAAGCACTTAGTAAACAACGACACGACAAGGATACACTTTTAGAAATACATcagtttatatacagtacaaatcCAAGAGCTCCGACGTGAAGCCGCCACATTCTCCTCCTGCGGCCGCGTCCGCCTCCGGGGCCCCACCTGCGCCTCGGGGCCGGGGCGGGACACTGCAGGGCAGCGCAGTCAGAGAGGACACACAGAGGCCCGTCTCGGCCGCTCGATCGTGATTGGATGCGTCTAGAGAGGAGGGCTGGCCGCGTGTAGTGTCTGTCACGAGTAACGTCCTAAATACTGCAGGGCCGCCCCGGGGTGAACACAGGGGGCAATTAACACCCGCAGGCCGTGGGCGGAGGGCAGTTCCAGTCCTCAGGGGCCGAAGGGGTTTCTGGGTTGCAGGGCTTTAGTGACCGGATTGAGCTGCGGAGGGGACACCCTTAACCCCCGAGGGCCCGGGGCCGCTCTCCGCCCAGCGCTGCGCCGCGGCCGGCCTGGCTCCGGAGACGCGCAGTAAGAGCTTTTAAACGATTGTCGTAACTATTTGCTCAAACAAATGTCTCTGAACATTCAGTAAGACTCTGGAGTACCTTTGTTTTCTTAGagagagattatatatatatatataaaaaaatcaaccaCAGCCAACTCTGCAGTTTGAACAGACAGGatgaaatatttactttgttctCTCAACATTCGTAGGTTCGTCCATCTTTCGTTACCATTTTAAAACTTGaaccagaacaaaaaaaacaacaactgttgATCAgataaaacagattttcaaacattttgtttagCTTGGCTTTTAAAAATCACAGGATCATTAAACAACAAAACGAAAGCAAAGACATCAGTGAgtgatttagaaaaaaaaatgatgaaaacaatgAGAGATAACTGTAAAACAGGAGCAATGTacactgaaacaaatacaatagtatttatcaaatataaatgataataatatagtattatagtaataaaaacaactgtaaaagCTTCTTTAATGTGGTACTGCTGTACAGGAGTCCAGTTATGCATGCTTTGCTTTAGCAGGAGAATGCGCTAATTAACCAATTTCGTAAAgccaattattcaattaacaacTGTGAGCCCAGGGTGGAACACAGCGGGGCTGCAGGAGTCTACAAACTCGAgttgctcttcctcctcctcctcctcacctacTGCTCTAGTTTGGCCGTTCGGCTCGGCAGGAACTCCCGATGTGTCAGCTCCCGATGTGGCAAAGCGCCGAGAGAAAGgacaatgaaaatacaattcaaaatacaaataactgaaaGATAATAGGCAGCACTGGGTTgtccccacctcctcctcctcttcctcctctcgtTCACAGCACCGGCGTCTCCGATGATAAACGCAAATTCATGTTTATTCAGAcagttgtgtgtttgcagtggaAAGACCCAGCAGCCCGACTCACACCGATACAGAAAgtcatcatcatcctcatcatctTCAACATCACAACAGCTCCGCTATCCGTCGATGCAGCAGGAGGACGGACTGTAACGCGCTTGCTTTGAATAATCGTGCTCAGAAGGACAAGTGTGAGCGGTGCTGTCCGGAGAGGGGGTCCCAATTCAGTCTCGTTGCCCCGTTTAGCCCCCAGACTCTGCACCCGGGGGGGGGCGGGGCAGATCAGTGCACAGGAGCCTCTGGagcaattgtgtgtgtgtgggggggtattgCTCGTCTGTTGATGATCCGCGTGTCCGGGTGTGCGTCTCGCTCCTCTTCGATCGGGACCCCGTCTCTCTCCGTCCCAGAacaacagtaacagtaacagtacaACAGTGGCGTCACGCTCGGCTCTGCGGGTCACTGACCAGACAGACAGAGCGGAGGGGCGGCGGAGGGAGAGGGGCAGCGGTCCGTCCACGGGGCGCAGTCTCTCCTCAGCCCGGGGGGCGCACTAGGCGTACACGTGCATGCCGCGGCGGTGCCAGAGGAGGAGGCGTGGCCGGGGGTGCCCTCGGAGCCGGCGCCGGTGCCGTAGCTGTGCTGGGAGGGGGGCGTGGGGTACTTATCCACCGGGCTCTGCAGGGTGTGGTAGGGGGGCAGCGCTCTCTGGGCGTCGGGGGGGTGCTGGGACAGCAGGGCGGCCTGCACATCCGTCAGCTGGTACATCATGTTCTGGACACAGTGCTGCGGCGGCGGCTGATTGGCCGGCTGGCCTCCCGACATCATCTGAAAGGTGACGATGGGCGGCAGCTGCTCGCGCGACATGCTAACGCTCATGGGGGACATCATGCCCCCCGGCAGCATGGTGCCGCCGCCCTGGTGGGCGTGGGGGTGCGACAGCGAGTGTGGGTGCTGGAGCAGGCCGGGGTGCTGGCCGCCCACCTGATGGGGGTGCAGCATGCCGAACATGTGGCCGTAGCCGGGCTTGGGCAGCCCCATCCAGTCGCACTGGCCCTGCCCCTGCCGGCCCACGCCCATGCCCTGCGACAGCATCTGGGACACGGGCGGTAGCAGGGGCCCCCGGGGGGCCGCGGTGGAGGCGGCGGGCGCAGCGGGGCACAGCGCGCCGGGCGGGGAGGTGGCGTCGGACACGTAGGCATGCGGCGACTCCAGGGACTCGACGGGCGACAGCGTGACGGAGCTCTCCGACAGCGCGGCCTTGGCCTCGGCCCCCTGCGTCTTCTTCCGGCGCCGGACCTTCGCGTCCTTGGGTTCCTTAGCTGGGCCGGGGCCCCCGCCCGCCCCGTGGAGGGCCTTAGCGCCGGGGTTGGCTCGGCGGCTCTTCTTGCCCTGGGGCCCCGGCCGCATGCCCAGGAAGGCCCCGTTGGCGCCGCAGACCAGCGGGGACAGGCCCGCCCCCCCCAGGTGCGCGTGGGGGCTGTGCACCAGGTTGTACTCGTCCAGCAGCCGCACGATGTCGTGGTGCATGCGCTCCTGCGCTGTGTCGCGCGGCAGCCGGTCCAGGTGGTCGGTGATGTCGCGGTTGGAGAAGTGGTCCAGCAGCACCTGGGCCGCCTCGAAACTGCCCTCCCGCGCCGCCAGGAACAGGGGTGTCTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU185126 lncRNA downstream 14434 22132266 ~ 22180932 (-) True G147122
TU185082 lncRNA downstream 212845 21982058 ~ 21982521 (-) False AMCG00005363
TU184873 lncRNA downstream 388060 21806980 ~ 21807306 (-) True G146951
TU184859 lncRNA downstream 449558 21745544 ~ 21745808 (-) False AMCG00005343
TU184798 lncRNA downstream 588831 21589996 ~ 21606535 (-) True G146891
TU185169 lncRNA upstream 30431 22229199 ~ 22229991 (-) True G147156
TU185197 lncRNA upstream 224221 22422989 ~ 22423230 (-) True G147184
TU185198 lncRNA upstream 226957 22425725 ~ 22426106 (-) True G147185
AMCG00005368 mRNA downstream 36961 22147047 ~ 22158405 (-) True AMCG00005368
AMCG00005369 mRNA downstream 49287 22145786 ~ 22146079 (-) True AMCG00005369
AMCG00005367 mRNA downstream 83112 22104142 ~ 22112254 (-) True AMCG00005367
AMCG00005359 mRNA downstream 107613 22086294 ~ 22087753 (-) True AMCG00005359
AMCG00005360 mRNA downstream 116539 22061733 ~ 22078827 (-) True AMCG00005360
AMCG00005382 mRNA upstream 17191 22215959 ~ 22223377 (-) True AMCG00005382
AMCG00005374 mRNA upstream 164826 22363594 ~ 22368062 (-) True AMCG00005374
AMCG00005375 mRNA upstream 195546 22394314 ~ 22395422 (-) True AMCG00005375
AMCG00005373 mRNA upstream 218152 22416920 ~ 22422016 (-) True AMCG00005373
TU185128 other downstream 36951 22145701 ~ 22158415 (-) True G147124
TU185123 other downstream 64817 22127907 ~ 22130549 (-) True G147121
TU185105 other downstream 93504 22036595 ~ 22101862 (-) True G147109
TU185104 other downstream 110422 22083717 ~ 22084944 (-) True G147108
TU185101 other downstream 160094 22030825 ~ 22035272 (-) False AMCG00005362

Expression Profile