RNA id: AMCG00005388


Basic Information

Item Value
RNA id AMCG00005388
length 1587
RNA type mRNA
GC content 0.63
exon number 2
gene id AMCG00005388
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 871157 ~ 873005 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCAGGGTCCAGGGGGGTCCAGTGCCTCAGCAGCATCACCGCACCGCGGCCAGACCCGCACAGACCCGCAACACGTCCGTCACTGCgctcccacaatgcattgtctTGTGCGCTGTGTGGGAGGGGGCCGTGTCGGCGCTCGCCCGTGGGTGACCCTGGCTGCGGGACACAGTGCGGTTCAGTCCCGCATTGATCAAGCAGCACGGCGGCAGCTGCACCCTGACCCGGCCCGGCCTGGACGCGCACAGCGGCGGAGACGATTTAGAAACGGCATCAAACCGCGCAGCTGCCACGTCGGTGTCGCTGCTACAATAAGCAGAAGCGCCCAGAGCAGCGCATCCTCGGCGGCCACCGTGTCATCGAGGCGTTTCTTATTCCAGCGCTGCCGTGCCGCAATGTGTCTGCTTTATGAAACCAACCCTTTCCCGCCACCCCGTCCAGCTGTCCCCGTGTCTCCCAGCATGGCTCAGGGCCCCAGCATCCGCTTCCGCTTTGTGGGCTACGGGCTGCTGCAGAAGATGGATGTGCTGCGGGAGCAGAGCCGGTTCTGTGACGTTACCGTGCACGTCGACATGCTCACTTTCCAGGGACACAGGGTGGTGCTGgcagcctcctcctccttcctgaGGGACCAGTTCCTGCTGAAGGACTCTACGGAGGCCACGTTATCTGTGGCTCAGAAGCCAGAGGTGGCCCTGGAGCTCCTGCGGTCCTGCTACACTGGCGTCCTGGAGTTCCCCCTGAAGGAGCTCATTCACTACCTCACAGCGGCCAGCTACCTGCAGATGAGCCACGTGGTGGAGAAGTGCCAGCAGGCTGCCAGCCAGTATGTCGAACCCAGCTTCTCCTTGGGCGACATTGACCTTGGCCAAGAGAACGACCATGATCCAGATCTCAGCTCCTCAAGTGAGGACATGGACCAGGAGGCGGCAGAAACCAGACCCAGGAAACACAGAGCCCGAGCCATAGCCGAGTCTCCGGAGCGGCCCAAGATAGAGTGGAAGGCGGAGCCGTGTGAGGTCTCTGAGCAGGAGAGCAGTGCGCTGTCCCCACTTCCCGGCCAGGCCCGCAGCCCTGTGACGTCTGAGTGGGTCAGTGCGGAGGACTTGCTTGTCATGAACAATGAGCTGGAGTTCCAGGGCTTGCATCCTCCCCCAGACCTTCCTGCCCGGGATGAGACTGAGAAGGGCCCCCCGGAGGGACTCCTTAAAGGGCCGTACCACTGCCGGGTCTGCTCCCAGGTCTTCAGGCTGCTGGAGAAGTATGTCTCGCACATGAGGGAGCACAAGGTGTCCCTGTGCCTGCGCTGCGGGAAGACCTTCTCCCAGAAAGTGAACCTGAAGCGGCATGTCCGCAGCCACATGGGCTTCAAGCCCTACCAGTGCCAGCTGTGCCAGAAGGTCTTCTCCCAGAAGGTCTCCCTGCAGGACCACCTGAACCTGCACAGTGGCGCCCGTCCACACCGCTGCAGCTGCTGCGACATGCAGTTCACACACAAGCCGGCGCTCCGGCGCCACCTGCGTGAGTGCCACGGGAAGAGCGCGGTGGACAGTTTCAGCTTGGAAATCCAGGAGGTGGTGCTCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU191347 lncRNA downstream 180215 690659 ~ 690942 (-) True G151979
TU191340 lncRNA downstream 493444 377355 ~ 377713 (-) True G151972
TU191337 lncRNA downstream 520835 346997 ~ 350322 (-) True G151970
TU191322 lncRNA downstream 538813 242154 ~ 332344 (-) True G151957
TU191313 lncRNA downstream 758745 108398 ~ 112412 (-) True AMCG00005400
TU191479 lncRNA upstream 125349 998354 ~ 1009739 (-) True G152071
TU191494 lncRNA upstream 192454 1065459 ~ 1070656 (-) True G152085
TU191548 lncRNA upstream 346322 1219327 ~ 1258926 (-) False G152133
TU191558 lncRNA upstream 346322 1219327 ~ 1258926 (-) True G152133
TU191552 lncRNA upstream 384292 1257297 ~ 1335440 (-) False G152133
AMCG00005387 mRNA downstream 470360 398920 ~ 400797 (-) True AMCG00005387
AMCG00005391 mRNA downstream 496145 350765 ~ 375012 (-) True AMCG00005391
AMCG00005395 mRNA downstream 603467 260508 ~ 267690 (-) True AMCG00005395
AMCG00005394 mRNA downstream 619984 248099 ~ 251173 (-) True AMCG00005394
AMCG00005396 mRNA downstream 638782 227258 ~ 232375 (-) True AMCG00005396
AMCG00005454 mRNA upstream 98666 971671 ~ 973719 (-) True AMCG00005454
AMCG00005474 mRNA upstream 141647 1014652 ~ 1021117 (-) True AMCG00005474
AMCG00005476 mRNA upstream 150030 1023035 ~ 1027249 (-) True AMCG00005476
AMCG00005475 mRNA upstream 163091 1036096 ~ 1051408 (-) True AMCG00005475
AMCG00005473 mRNA upstream 186248 1059253 ~ 1062795 (-) True AMCG00005473
TU191268 other downstream 807429 62621 ~ 63728 (-) False AMCG00005407
TU191554 other upstream 346322 1219327 ~ 1258926 (-) False G152133
TU191607 other upstream 498378 1371383 ~ 1371737 (-) False AMCG00005419
TU191743 other upstream 632935 1505940 ~ 1507628 (-) True G152277
TU191734 other upstream 739768 1612773 ~ 1615497 (-) False G152271
TU191793 other upstream 835678 1708683 ~ 1721202 (-) True AMCG00005461

Expression Profile