RNA id: AMCG00005389


Basic Information

Item Value
RNA id AMCG00005389
length 429
RNA type mRNA
GC content 0.57
exon number 5
gene id AMCG00005389
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 1109601 ~ 1111890 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTACCCCCACTCCCCCTGTCAGGCTCCAAAAAAGGCTAAGAAGAAGGCGGAGGGTGCCAGCTCCAATCGACTGTGCTTGTGCTCCGCAGGCCGCATCAACGTGAAGAacgaggagctggaggagatgCTGAAGGAGGCGCCGGGGGCCATCAACTTCACCGTGTTCCTCACCATGTTCGGAGAGAAGCTCAAAGGCAGTGACCCGGAAGAGACCATCATGAATGCCTTCAAGATCTTCGACCCGGAAGCCCACGGACACATCAGAGCAGATTACATCAAGCGCATGCTGATGACGCAGGCAGACAAGTTCAGCGAGGAAGAGGTGCAGCAGATGTTTACAGCGTTCCCCCCGGACGTCGCGGGGAACCTGGACTACAAGAACCTGTGTTATGTCATCACCCACGGAGAGGAGAAGGACCAGGAGTGA

Function

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU191494 lncRNA downstream 38945 1065459 ~ 1070656 (-) True G152085
TU191479 lncRNA downstream 99862 998354 ~ 1009739 (-) True G152071
TU191347 lncRNA downstream 418659 690659 ~ 690942 (-) True G151979
TU191340 lncRNA downstream 731888 377355 ~ 377713 (-) True G151972
TU191337 lncRNA downstream 759279 346997 ~ 350322 (-) True G151970
TU191548 lncRNA upstream 107437 1219327 ~ 1258926 (-) False G152133
TU191558 lncRNA upstream 107437 1219327 ~ 1258926 (-) True G152133
TU191552 lncRNA upstream 145407 1257297 ~ 1335440 (-) False G152133
TU191612 lncRNA upstream 285451 1397341 ~ 1398392 (-) True G152178
TU191631 lncRNA upstream 346347 1458237 ~ 1458662 (-) True G152197
AMCG00005473 mRNA downstream 46806 1059253 ~ 1062795 (-) True AMCG00005473
AMCG00005475 mRNA downstream 58193 1036096 ~ 1051408 (-) True AMCG00005475
AMCG00005476 mRNA downstream 82352 1023035 ~ 1027249 (-) True AMCG00005476
AMCG00005474 mRNA downstream 88484 1014652 ~ 1021117 (-) True AMCG00005474
AMCG00005454 mRNA downstream 135882 971671 ~ 973719 (-) True AMCG00005454
AMCG00005417 mRNA upstream 187476 1299366 ~ 1300547 (-) True AMCG00005417
AMCG00005419 mRNA upstream 259452 1371342 ~ 1376473 (-) True AMCG00005419
AMCG00005427 mRNA upstream 320014 1431904 ~ 1436308 (-) True AMCG00005427
AMCG00005428 mRNA upstream 350342 1462232 ~ 1467875 (-) True AMCG00005428
AMCG00005426 mRNA upstream 368286 1480176 ~ 1485828 (-) True AMCG00005426
TU191268 other downstream 1045873 62621 ~ 63728 (-) False AMCG00005407
TU191554 other upstream 107437 1219327 ~ 1258926 (-) False G152133
TU191607 other upstream 259493 1371383 ~ 1371737 (-) False AMCG00005419
TU191743 other upstream 394050 1505940 ~ 1507628 (-) True G152277
TU191734 other upstream 500883 1612773 ~ 1615497 (-) False G152271
TU191793 other upstream 596793 1708683 ~ 1721202 (-) True AMCG00005461

Expression Profile